Gene : AT4G39020 A. thaliana TAIR10
Defline:  (1 of 1) PF00018 - SH3 domain (SH3_1) Genomic Order:  4009
Name:  ? AT4G39020 Secondary Identifier:  ? PAC:19647927
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39020 0.5kb upstream 0.5kb upstream 2526 true Chr4: 18181815-18184340 Arabidopsis thaliana
AT4G39020 0.5kb upstream 0.5kb upstream 500 false Chr4: 18181815-18182314 Arabidopsis thaliana
AT4G39020 0.5kb downstream 0.5kb downstream 2526 true Chr4: 18182315-18184840 Arabidopsis thaliana
AT4G39020 0.5kb downstream 0.5kb downstream 500 false Chr4: 18184341-18184840 Arabidopsis thaliana
AT4G39020 1.0kb upstream 1.0kb upstream 3026 true Chr4: 18181315-18184340 Arabidopsis thaliana
AT4G39020 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18181315-18182314 Arabidopsis thaliana
AT4G39020 1.0kb downstream 1.0kb downstream 3026 true Chr4: 18182315-18185340 Arabidopsis thaliana
AT4G39020 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18184341-18185340 Arabidopsis thaliana
AT4G39020 2.0kb upstream 2.0kb upstream 4026 true Chr4: 18180315-18184340 Arabidopsis thaliana
AT4G39020 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18180315-18182314 Arabidopsis thaliana
AT4G39020 2.0kb downstream 2.0kb downstream 4026 true Chr4: 18182315-18186340 Arabidopsis thaliana
AT4G39020 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18184341-18186340 Arabidopsis thaliana
AT4G39020 5.0kb upstream 5.0kb upstream 7026 true Chr4: 18177315-18184340 Arabidopsis thaliana
AT4G39020 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18177315-18182314 Arabidopsis thaliana
AT4G39020 5.0kb downstream 5.0kb downstream 7026 true Chr4: 18182315-18189340 Arabidopsis thaliana
AT4G39020 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18184341-18189340 Arabidopsis thaliana
AT4G39020 10.0kb upstream 10.0kb upstream 12026 true Chr4: 18172315-18184340 Arabidopsis thaliana
AT4G39020 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18172315-18182314 Arabidopsis thaliana
AT4G39020 10.0kb downstream 10.0kb downstream 12026 true Chr4: 18182315-18194340 Arabidopsis thaliana
AT4G39020 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18184341-18194340 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029429 5273 Angiosperm View MSA
122330735 5261 Brassicaceae Singleton cluster - no MSA
123771961 5264 Brassicales-Malvales Singleton cluster - no MSA
124270483 5266 SBM Singleton cluster - no MSA
124247908 5268 Malvidae View MSA
124038561 5270 Rosid View MSA
123747696 5271 Pentapetalae View MSA
122772271 5272 Eudicot View MSA
121348737 5274 Embryophyte View MSA
123380996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low  
cufflinks 0.007     Low  
cufflinks 0.007     Low  
cufflinks 0.008     Low  
cufflinks 0.019     Low  
cufflinks 0.07     Low High

0 Strain