Gene : AT4G38650 A. thaliana TAIR10
Defline:  (1 of 13) 3.2.1.8 - Endo-1,4-beta-xylanase Genomic Order:  3972
Name:  ? AT4G38650 Secondary Identifier:  ? PAC:19645654
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38650 0.5kb upstream 0.5kb upstream 3184 true Chr4: 18062666-18065849 Arabidopsis thaliana
AT4G38650 0.5kb upstream 0.5kb upstream 500 false Chr4: 18062666-18063165 Arabidopsis thaliana
AT4G38650 0.5kb downstream 0.5kb downstream 3184 true Chr4: 18063166-18066349 Arabidopsis thaliana
AT4G38650 0.5kb downstream 0.5kb downstream 500 false Chr4: 18065850-18066349 Arabidopsis thaliana
AT4G38650 1.0kb upstream 1.0kb upstream 3684 true Chr4: 18062166-18065849 Arabidopsis thaliana
AT4G38650 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18062166-18063165 Arabidopsis thaliana
AT4G38650 1.0kb downstream 1.0kb downstream 3684 true Chr4: 18063166-18066849 Arabidopsis thaliana
AT4G38650 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18065850-18066849 Arabidopsis thaliana
AT4G38650 2.0kb upstream 2.0kb upstream 4684 true Chr4: 18061166-18065849 Arabidopsis thaliana
AT4G38650 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18061166-18063165 Arabidopsis thaliana
AT4G38650 2.0kb downstream 2.0kb downstream 4684 true Chr4: 18063166-18067849 Arabidopsis thaliana
AT4G38650 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18065850-18067849 Arabidopsis thaliana
AT4G38650 5.0kb upstream 5.0kb upstream 7684 true Chr4: 18058166-18065849 Arabidopsis thaliana
AT4G38650 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18058166-18063165 Arabidopsis thaliana
AT4G38650 5.0kb downstream 5.0kb downstream 7684 true Chr4: 18063166-18070849 Arabidopsis thaliana
AT4G38650 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18065850-18070849 Arabidopsis thaliana
AT4G38650 10.0kb upstream 10.0kb upstream 12684 true Chr4: 18053166-18065849 Arabidopsis thaliana
AT4G38650 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18053166-18063165 Arabidopsis thaliana
AT4G38650 10.0kb downstream 10.0kb downstream 12684 true Chr4: 18063166-18075849 Arabidopsis thaliana
AT4G38650 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18065850-18075849 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367968 5261 Brassicaceae View MSA
123839176 5264 Brassicales-Malvales View MSA
124341721 5266 SBM View MSA
124242747 5268 Malvidae View MSA
124067450 5270 Rosid View MSA
123751912 5271 Pentapetalae View MSA
122790761 5272 Eudicot View MSA
122050145 5273 Angiosperm View MSA
121311762 5274 Embryophyte View MSA
123426707 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.939       High
cufflinks 0.44        
cufflinks 0.649        
cufflinks 0.43        
cufflinks 0.736        
cufflinks 0.412        

0 Strain