Gene : AT4G38700 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21495//PTHR21495:SF15 - NUCLEOPORIN-RELATED // DIRIGENT PROTEIN 15-RELATED Genomic Order:  3977
Name:  ? AT4G38700 Secondary Identifier:  ? PAC:19646229
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38700 0.5kb upstream 0.5kb upstream 1219 true Chr4: 18076459-18077677 Arabidopsis thaliana
AT4G38700 0.5kb upstream 0.5kb upstream 500 false Chr4: 18077178-18077677 Arabidopsis thaliana
AT4G38700 0.5kb downstream 0.5kb downstream 1219 true Chr4: 18075959-18077177 Arabidopsis thaliana
AT4G38700 0.5kb downstream 0.5kb downstream 500 false Chr4: 18075959-18076458 Arabidopsis thaliana
AT4G38700 1.0kb upstream 1.0kb upstream 1719 true Chr4: 18076459-18078177 Arabidopsis thaliana
AT4G38700 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18077178-18078177 Arabidopsis thaliana
AT4G38700 1.0kb downstream 1.0kb downstream 1719 true Chr4: 18075459-18077177 Arabidopsis thaliana
AT4G38700 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18075459-18076458 Arabidopsis thaliana
AT4G38700 2.0kb upstream 2.0kb upstream 2719 true Chr4: 18076459-18079177 Arabidopsis thaliana
AT4G38700 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18077178-18079177 Arabidopsis thaliana
AT4G38700 2.0kb downstream 2.0kb downstream 2719 true Chr4: 18074459-18077177 Arabidopsis thaliana
AT4G38700 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18074459-18076458 Arabidopsis thaliana
AT4G38700 5.0kb upstream 5.0kb upstream 5719 true Chr4: 18076459-18082177 Arabidopsis thaliana
AT4G38700 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18077178-18082177 Arabidopsis thaliana
AT4G38700 5.0kb downstream 5.0kb downstream 5719 true Chr4: 18071459-18077177 Arabidopsis thaliana
AT4G38700 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18071459-18076458 Arabidopsis thaliana
AT4G38700 10.0kb upstream 10.0kb upstream 10719 true Chr4: 18076459-18087177 Arabidopsis thaliana
AT4G38700 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18077178-18087177 Arabidopsis thaliana
AT4G38700 10.0kb downstream 10.0kb downstream 10719 true Chr4: 18066459-18077177 Arabidopsis thaliana
AT4G38700 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18066459-18076458 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366956 5261 Brassicaceae View MSA
123837035 5264 Brassicales-Malvales View MSA
124346991 5266 SBM View MSA
124250419 5268 Malvidae View MSA
124072426 5270 Rosid View MSA
123751910 5271 Pentapetalae View MSA
122797233 5272 Eudicot View MSA
122051134 5273 Angiosperm View MSA
121351582 5274 Embryophyte View MSA
123382236 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.966       High
cufflinks 0.841        
cufflinks 1.611        
cufflinks 0.272     Low Low
cufflinks 1.478        
cufflinks 0.621        

0 Strain