Gene : AT4G38550 A. thaliana TAIR10
Defline:  (1 of 6) PTHR21704//PTHR21704:SF19 - NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED // EXPRESSED PROTEIN-RELATED Genomic Order:  3963
Name:  ? AT4G38550 Secondary Identifier:  ? PAC:19647763
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38550 0.5kb upstream 0.5kb upstream 3666 true Chr4: 18025135-18028800 Arabidopsis thaliana
AT4G38550 0.5kb upstream 0.5kb upstream 500 false Chr4: 18025135-18025634 Arabidopsis thaliana
AT4G38550 0.5kb downstream 0.5kb downstream 3666 true Chr4: 18025635-18029300 Arabidopsis thaliana
AT4G38550 0.5kb downstream 0.5kb downstream 500 false Chr4: 18028801-18029300 Arabidopsis thaliana
AT4G38550 1.0kb upstream 1.0kb upstream 4166 true Chr4: 18024635-18028800 Arabidopsis thaliana
AT4G38550 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18024635-18025634 Arabidopsis thaliana
AT4G38550 1.0kb downstream 1.0kb downstream 4166 true Chr4: 18025635-18029800 Arabidopsis thaliana
AT4G38550 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18028801-18029800 Arabidopsis thaliana
AT4G38550 2.0kb upstream 2.0kb upstream 5166 true Chr4: 18023635-18028800 Arabidopsis thaliana
AT4G38550 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18023635-18025634 Arabidopsis thaliana
AT4G38550 2.0kb downstream 2.0kb downstream 5166 true Chr4: 18025635-18030800 Arabidopsis thaliana
AT4G38550 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18028801-18030800 Arabidopsis thaliana
AT4G38550 5.0kb upstream 5.0kb upstream 8166 true Chr4: 18020635-18028800 Arabidopsis thaliana
AT4G38550 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18020635-18025634 Arabidopsis thaliana
AT4G38550 5.0kb downstream 5.0kb downstream 8166 true Chr4: 18025635-18033800 Arabidopsis thaliana
AT4G38550 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18028801-18033800 Arabidopsis thaliana
AT4G38550 10.0kb upstream 10.0kb upstream 13166 true Chr4: 18015635-18028800 Arabidopsis thaliana
AT4G38550 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18015635-18025634 Arabidopsis thaliana
AT4G38550 10.0kb downstream 10.0kb downstream 13166 true Chr4: 18025635-18038800 Arabidopsis thaliana
AT4G38550 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18028801-18038800 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376052 5261 Brassicaceae View MSA
123801127 5264 Brassicales-Malvales View MSA
124298464 5266 SBM View MSA
124245139 5268 Malvidae View MSA
124050567 5270 Rosid View MSA
123751665 5271 Pentapetalae View MSA
122793321 5272 Eudicot View MSA
122042349 5273 Angiosperm View MSA
121309949 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 113.186     High High
cufflinks 9.064       Low
cufflinks 56.941     High  
cufflinks 12.421        
cufflinks 73.594     High  
cufflinks 10.119        

0 Strain