Gene : AT4G38560 A. thaliana TAIR10
Defline:  (1 of 8) PTHR21704 - NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED Genomic Order:  3964
Name:  ? AT4G38560 Secondary Identifier:  ? PAC:19644687
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38560 0.5kb upstream 0.5kb upstream 2638 true Chr4: 18028696-18031333 Arabidopsis thaliana
AT4G38560 0.5kb upstream 0.5kb upstream 500 false Chr4: 18028696-18029195 Arabidopsis thaliana
AT4G38560 0.5kb downstream 0.5kb downstream 2638 true Chr4: 18029196-18031833 Arabidopsis thaliana
AT4G38560 0.5kb downstream 0.5kb downstream 500 false Chr4: 18031334-18031833 Arabidopsis thaliana
AT4G38560 1.0kb upstream 1.0kb upstream 3138 true Chr4: 18028196-18031333 Arabidopsis thaliana
AT4G38560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18028196-18029195 Arabidopsis thaliana
AT4G38560 1.0kb downstream 1.0kb downstream 3138 true Chr4: 18029196-18032333 Arabidopsis thaliana
AT4G38560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18031334-18032333 Arabidopsis thaliana
AT4G38560 2.0kb upstream 2.0kb upstream 4138 true Chr4: 18027196-18031333 Arabidopsis thaliana
AT4G38560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18027196-18029195 Arabidopsis thaliana
AT4G38560 2.0kb downstream 2.0kb downstream 4138 true Chr4: 18029196-18033333 Arabidopsis thaliana
AT4G38560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18031334-18033333 Arabidopsis thaliana
AT4G38560 5.0kb upstream 5.0kb upstream 7138 true Chr4: 18024196-18031333 Arabidopsis thaliana
AT4G38560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18024196-18029195 Arabidopsis thaliana
AT4G38560 5.0kb downstream 5.0kb downstream 7138 true Chr4: 18029196-18036333 Arabidopsis thaliana
AT4G38560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18031334-18036333 Arabidopsis thaliana
AT4G38560 10.0kb upstream 10.0kb upstream 12138 true Chr4: 18019196-18031333 Arabidopsis thaliana
AT4G38560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18019196-18029195 Arabidopsis thaliana
AT4G38560 10.0kb downstream 10.0kb downstream 12138 true Chr4: 18029196-18041333 Arabidopsis thaliana
AT4G38560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18031334-18041333 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376052 5261 Brassicaceae View MSA
123801127 5264 Brassicales-Malvales View MSA
124298464 5266 SBM View MSA
124245139 5268 Malvidae View MSA
124050567 5270 Rosid View MSA
123751665 5271 Pentapetalae View MSA
122793321 5272 Eudicot View MSA
122042349 5273 Angiosperm View MSA
121309949 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.674       High
cufflinks 0.149     Low  
cufflinks 0.591        
cufflinks 0.065     Low  
cufflinks 1.471        
cufflinks 0.067     Low  

0 Strain