Gene : ROPGEF1 A. thaliana TAIR10
Primary Identifier:  ? AT4G38430 Defline:  (1 of 1) PTHR33101:SF6 - ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1
Genomic Order:  3951 Name:  ? AT4G38430
Secondary Identifier:  ? PAC:19647042
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38430 0.5kb upstream 0.5kb upstream 2842 true Chr4: 17985966-17988807 Arabidopsis thaliana
AT4G38430 0.5kb upstream 0.5kb upstream 500 false Chr4: 17985966-17986465 Arabidopsis thaliana
AT4G38430 0.5kb downstream 0.5kb downstream 2842 true Chr4: 17986466-17989307 Arabidopsis thaliana
AT4G38430 0.5kb downstream 0.5kb downstream 500 false Chr4: 17988808-17989307 Arabidopsis thaliana
AT4G38430 1.0kb upstream 1.0kb upstream 3342 true Chr4: 17985466-17988807 Arabidopsis thaliana
AT4G38430 1.0kb upstream 1.0kb upstream 1000 false Chr4: 17985466-17986465 Arabidopsis thaliana
AT4G38430 1.0kb downstream 1.0kb downstream 3342 true Chr4: 17986466-17989807 Arabidopsis thaliana
AT4G38430 1.0kb downstream 1.0kb downstream 1000 false Chr4: 17988808-17989807 Arabidopsis thaliana
AT4G38430 2.0kb upstream 2.0kb upstream 4342 true Chr4: 17984466-17988807 Arabidopsis thaliana
AT4G38430 2.0kb upstream 2.0kb upstream 2000 false Chr4: 17984466-17986465 Arabidopsis thaliana
AT4G38430 2.0kb downstream 2.0kb downstream 4342 true Chr4: 17986466-17990807 Arabidopsis thaliana
AT4G38430 2.0kb downstream 2.0kb downstream 2000 false Chr4: 17988808-17990807 Arabidopsis thaliana
AT4G38430 5.0kb upstream 5.0kb upstream 7342 true Chr4: 17981466-17988807 Arabidopsis thaliana
AT4G38430 5.0kb upstream 5.0kb upstream 5000 false Chr4: 17981466-17986465 Arabidopsis thaliana
AT4G38430 5.0kb downstream 5.0kb downstream 7342 true Chr4: 17986466-17993807 Arabidopsis thaliana
AT4G38430 5.0kb downstream 5.0kb downstream 5000 false Chr4: 17988808-17993807 Arabidopsis thaliana
AT4G38430 10.0kb upstream 10.0kb upstream 12342 true Chr4: 17976466-17988807 Arabidopsis thaliana
AT4G38430 10.0kb upstream 10.0kb upstream 10000 false Chr4: 17976466-17986465 Arabidopsis thaliana
AT4G38430 10.0kb downstream 10.0kb downstream 12342 true Chr4: 17986466-17998807 Arabidopsis thaliana
AT4G38430 10.0kb downstream 10.0kb downstream 10000 false Chr4: 17988808-17998807 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375364 5261 Brassicaceae View MSA
123834927 5264 Brassicales-Malvales View MSA
124336855 5266 SBM View MSA
124242836 5268 Malvidae View MSA
124066170 5270 Rosid View MSA
123737704 5271 Pentapetalae View MSA
122792292 5272 Eudicot View MSA
122042177 5273 Angiosperm View MSA
121349126 5274 Embryophyte View MSA
123381182 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.671        
cufflinks 29.422     High  
cufflinks 28.993     High  
cufflinks 29.89        
cufflinks 21.751       Low
cufflinks 29.303     High  

0 Strain