Gene : AGL21 A. thaliana TAIR10
Primary Identifier:  ? AT4G37940 Defline:  (1 of 2) PTHR11945//PTHR11945:SF144 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL17-RELATED
Genomic Order:  3899 Name:  ? AT4G37940
Secondary Identifier:  ? PAC:19644309
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G37940 0.5kb upstream 0.5kb upstream 3550 true Chr4: 17835572-17839121 Arabidopsis thaliana
AT4G37940 0.5kb upstream 0.5kb upstream 500 false Chr4: 17838622-17839121 Arabidopsis thaliana
AT4G37940 0.5kb downstream 0.5kb downstream 3550 true Chr4: 17835072-17838621 Arabidopsis thaliana
AT4G37940 0.5kb downstream 0.5kb downstream 500 false Chr4: 17835072-17835571 Arabidopsis thaliana
AT4G37940 1.0kb upstream 1.0kb upstream 4050 true Chr4: 17835572-17839621 Arabidopsis thaliana
AT4G37940 1.0kb upstream 1.0kb upstream 1000 false Chr4: 17838622-17839621 Arabidopsis thaliana
AT4G37940 1.0kb downstream 1.0kb downstream 4050 true Chr4: 17834572-17838621 Arabidopsis thaliana
AT4G37940 1.0kb downstream 1.0kb downstream 1000 false Chr4: 17834572-17835571 Arabidopsis thaliana
AT4G37940 2.0kb upstream 2.0kb upstream 5050 true Chr4: 17835572-17840621 Arabidopsis thaliana
AT4G37940 2.0kb upstream 2.0kb upstream 2000 false Chr4: 17838622-17840621 Arabidopsis thaliana
AT4G37940 2.0kb downstream 2.0kb downstream 5050 true Chr4: 17833572-17838621 Arabidopsis thaliana
AT4G37940 2.0kb downstream 2.0kb downstream 2000 false Chr4: 17833572-17835571 Arabidopsis thaliana
AT4G37940 5.0kb upstream 5.0kb upstream 8050 true Chr4: 17835572-17843621 Arabidopsis thaliana
AT4G37940 5.0kb upstream 5.0kb upstream 5000 false Chr4: 17838622-17843621 Arabidopsis thaliana
AT4G37940 5.0kb downstream 5.0kb downstream 8050 true Chr4: 17830572-17838621 Arabidopsis thaliana
AT4G37940 5.0kb downstream 5.0kb downstream 5000 false Chr4: 17830572-17835571 Arabidopsis thaliana
AT4G37940 10.0kb upstream 10.0kb upstream 13050 true Chr4: 17835572-17848621 Arabidopsis thaliana
AT4G37940 10.0kb upstream 10.0kb upstream 10000 false Chr4: 17838622-17848621 Arabidopsis thaliana
AT4G37940 10.0kb downstream 10.0kb downstream 13050 true Chr4: 17825572-17838621 Arabidopsis thaliana
AT4G37940 10.0kb downstream 10.0kb downstream 10000 false Chr4: 17825572-17835571 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378598 5261 Brassicaceae View MSA
123841544 5264 Brassicales-Malvales View MSA
124351591 5266 SBM View MSA
124253386 5268 Malvidae View MSA
124074630 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low Low
cufflinks 7.11        
cufflinks 0.014     Low  
cufflinks 8.96        
cufflinks 0.025     Low  
cufflinks 6.374        

0 Strain