Gene : APTX A. thaliana TAIR10
Primary Identifier:  ? AT5G01310 Defline:  (1 of 1) K10863 - aprataxin [EC:3.-.-.-] (APTX)
Genomic Order:  34 Name:  ? AT5G01310
Secondary Identifier:  ? PAC:19672009
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01310 0.5kb upstream 0.5kb upstream 4157 true Chr5: 124804-128960 Arabidopsis thaliana
AT5G01310 0.5kb upstream 0.5kb upstream 500 false Chr5: 124804-125303 Arabidopsis thaliana
AT5G01310 0.5kb downstream 0.5kb downstream 4157 true Chr5: 125304-129460 Arabidopsis thaliana
AT5G01310 0.5kb downstream 0.5kb downstream 500 false Chr5: 128961-129460 Arabidopsis thaliana
AT5G01310 1.0kb upstream 1.0kb upstream 4657 true Chr5: 124304-128960 Arabidopsis thaliana
AT5G01310 1.0kb upstream 1.0kb upstream 1000 false Chr5: 124304-125303 Arabidopsis thaliana
AT5G01310 1.0kb downstream 1.0kb downstream 4657 true Chr5: 125304-129960 Arabidopsis thaliana
AT5G01310 1.0kb downstream 1.0kb downstream 1000 false Chr5: 128961-129960 Arabidopsis thaliana
AT5G01310 2.0kb upstream 2.0kb upstream 5657 true Chr5: 123304-128960 Arabidopsis thaliana
AT5G01310 2.0kb upstream 2.0kb upstream 2000 false Chr5: 123304-125303 Arabidopsis thaliana
AT5G01310 2.0kb downstream 2.0kb downstream 5657 true Chr5: 125304-130960 Arabidopsis thaliana
AT5G01310 2.0kb downstream 2.0kb downstream 2000 false Chr5: 128961-130960 Arabidopsis thaliana
AT5G01310 5.0kb upstream 5.0kb upstream 8657 true Chr5: 120304-128960 Arabidopsis thaliana
AT5G01310 5.0kb upstream 5.0kb upstream 5000 false Chr5: 120304-125303 Arabidopsis thaliana
AT5G01310 5.0kb downstream 5.0kb downstream 8657 true Chr5: 125304-133960 Arabidopsis thaliana
AT5G01310 5.0kb downstream 5.0kb downstream 5000 false Chr5: 128961-133960 Arabidopsis thaliana
AT5G01310 10.0kb upstream 10.0kb upstream 13657 true Chr5: 115304-128960 Arabidopsis thaliana
AT5G01310 10.0kb upstream 10.0kb upstream 10000 false Chr5: 115304-125303 Arabidopsis thaliana
AT5G01310 10.0kb downstream 10.0kb downstream 13657 true Chr5: 125304-138960 Arabidopsis thaliana
AT5G01310 10.0kb downstream 10.0kb downstream 10000 false Chr5: 128961-138960 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379371 5261 Brassicaceae View MSA
123835347 5264 Brassicales-Malvales View MSA
124342119 5266 SBM View MSA
124243468 5268 Malvidae View MSA
124068134 5270 Rosid View MSA
123738635 5271 Pentapetalae View MSA
122788277 5272 Eudicot View MSA
122043301 5273 Angiosperm View MSA
121345852 5274 Embryophyte View MSA
123423994 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.47        
cufflinks 2.71        
cufflinks 1.872       Low
cufflinks 2.75        
cufflinks 2.211        
cufflinks 2.665        

0 Strain