Gene : AT5G01380 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10032//PTHR10032:SF215 - ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS // TRIHELIX TRANSCRIPTION FACTOR GT-3A-RELATED Genomic Order:  41
Name:  ? AT5G01380 Secondary Identifier:  ? PAC:19668828
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01380 0.5kb upstream 0.5kb upstream 2463 true Chr5: 155639-158101 Arabidopsis thaliana
AT5G01380 0.5kb upstream 0.5kb upstream 500 false Chr5: 157602-158101 Arabidopsis thaliana
AT5G01380 0.5kb downstream 0.5kb downstream 2463 true Chr5: 155139-157601 Arabidopsis thaliana
AT5G01380 0.5kb downstream 0.5kb downstream 500 false Chr5: 155139-155638 Arabidopsis thaliana
AT5G01380 1.0kb upstream 1.0kb upstream 2963 true Chr5: 155639-158601 Arabidopsis thaliana
AT5G01380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 157602-158601 Arabidopsis thaliana
AT5G01380 1.0kb downstream 1.0kb downstream 2963 true Chr5: 154639-157601 Arabidopsis thaliana
AT5G01380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 154639-155638 Arabidopsis thaliana
AT5G01380 2.0kb upstream 2.0kb upstream 3963 true Chr5: 155639-159601 Arabidopsis thaliana
AT5G01380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 157602-159601 Arabidopsis thaliana
AT5G01380 2.0kb downstream 2.0kb downstream 3963 true Chr5: 153639-157601 Arabidopsis thaliana
AT5G01380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 153639-155638 Arabidopsis thaliana
AT5G01380 5.0kb upstream 5.0kb upstream 6963 true Chr5: 155639-162601 Arabidopsis thaliana
AT5G01380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 157602-162601 Arabidopsis thaliana
AT5G01380 5.0kb downstream 5.0kb downstream 6963 true Chr5: 150639-157601 Arabidopsis thaliana
AT5G01380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 150639-155638 Arabidopsis thaliana
AT5G01380 10.0kb upstream 10.0kb upstream 11963 true Chr5: 155639-167601 Arabidopsis thaliana
AT5G01380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 157602-167601 Arabidopsis thaliana
AT5G01380 10.0kb downstream 10.0kb downstream 11963 true Chr5: 145639-157601 Arabidopsis thaliana
AT5G01380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 145639-155638 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361752 5261 Brassicaceae View MSA
123838555 5264 Brassicales-Malvales View MSA
124337533 5266 SBM View MSA
124254329 5268 Malvidae View MSA
124061042 5270 Rosid View MSA
123753444 5271 Pentapetalae View MSA
122785862 5272 Eudicot View MSA
122041695 5273 Angiosperm View MSA
121348900 5274 Embryophyte View MSA
123381067 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.156     Low  
cufflinks 8.109       High
cufflinks 0.209     Low  
cufflinks 3.467        
cufflinks 0.194     Low  
cufflinks 7.285       High

0 Strain