Gene : AT5G01110 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  13
Name:  ? AT5G01110 Secondary Identifier:  ? PAC:19669268
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01110 0.5kb upstream 0.5kb upstream 3108 true Chr5: 41768-44875 Arabidopsis thaliana
AT5G01110 0.5kb upstream 0.5kb upstream 500 false Chr5: 44376-44875 Arabidopsis thaliana
AT5G01110 0.5kb downstream 0.5kb downstream 3108 true Chr5: 41268-44375 Arabidopsis thaliana
AT5G01110 0.5kb downstream 0.5kb downstream 500 false Chr5: 41268-41767 Arabidopsis thaliana
AT5G01110 1.0kb upstream 1.0kb upstream 3608 true Chr5: 41768-45375 Arabidopsis thaliana
AT5G01110 1.0kb upstream 1.0kb upstream 1000 false Chr5: 44376-45375 Arabidopsis thaliana
AT5G01110 1.0kb downstream 1.0kb downstream 3608 true Chr5: 40768-44375 Arabidopsis thaliana
AT5G01110 1.0kb downstream 1.0kb downstream 1000 false Chr5: 40768-41767 Arabidopsis thaliana
AT5G01110 2.0kb upstream 2.0kb upstream 4608 true Chr5: 41768-46375 Arabidopsis thaliana
AT5G01110 2.0kb upstream 2.0kb upstream 2000 false Chr5: 44376-46375 Arabidopsis thaliana
AT5G01110 2.0kb downstream 2.0kb downstream 4608 true Chr5: 39768-44375 Arabidopsis thaliana
AT5G01110 2.0kb downstream 2.0kb downstream 2000 false Chr5: 39768-41767 Arabidopsis thaliana
AT5G01110 5.0kb upstream 5.0kb upstream 7608 true Chr5: 41768-49375 Arabidopsis thaliana
AT5G01110 5.0kb upstream 5.0kb upstream 5000 false Chr5: 44376-49375 Arabidopsis thaliana
AT5G01110 5.0kb downstream 5.0kb downstream 7608 true Chr5: 36768-44375 Arabidopsis thaliana
AT5G01110 5.0kb downstream 5.0kb downstream 5000 false Chr5: 36768-41767 Arabidopsis thaliana
AT5G01110 10.0kb upstream 10.0kb upstream 12608 true Chr5: 41768-54375 Arabidopsis thaliana
AT5G01110 10.0kb upstream 10.0kb upstream 10000 false Chr5: 44376-54375 Arabidopsis thaliana
AT5G01110 10.0kb downstream 10.0kb downstream 12608 true Chr5: 31768-44375 Arabidopsis thaliana
AT5G01110 10.0kb downstream 10.0kb downstream 10000 false Chr5: 31768-41767 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364852 5261 Brassicaceae View MSA
123834775 5264 Brassicales-Malvales View MSA
124339808 5266 SBM View MSA
124243562 5268 Malvidae View MSA
124066023 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.032        
cufflinks 2.029       High
cufflinks 0.79        
cufflinks 1.473        
cufflinks 0.718       Low
cufflinks 1.741        

0 Strain