Gene : PTR5 A. thaliana TAIR10
Primary Identifier:  ? AT5G01180 Defline:  (1 of 2) PTHR11654//PTHR11654:SF125 - OLIGOPEPTIDE TRANSPORTER-RELATED // SUBFAMILY NOT NAMED
Genomic Order:  20 Name:  ? AT5G01180
Secondary Identifier:  ? PAC:19668575
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01180 0.5kb upstream 0.5kb upstream 3332 true Chr5: 61017-64348 Arabidopsis thaliana
AT5G01180 0.5kb upstream 0.5kb upstream 500 false Chr5: 63849-64348 Arabidopsis thaliana
AT5G01180 0.5kb downstream 0.5kb downstream 3332 true Chr5: 60517-63848 Arabidopsis thaliana
AT5G01180 0.5kb downstream 0.5kb downstream 500 false Chr5: 60517-61016 Arabidopsis thaliana
AT5G01180 1.0kb upstream 1.0kb upstream 3832 true Chr5: 61017-64848 Arabidopsis thaliana
AT5G01180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 63849-64848 Arabidopsis thaliana
AT5G01180 1.0kb downstream 1.0kb downstream 3832 true Chr5: 60017-63848 Arabidopsis thaliana
AT5G01180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 60017-61016 Arabidopsis thaliana
AT5G01180 2.0kb upstream 2.0kb upstream 4832 true Chr5: 61017-65848 Arabidopsis thaliana
AT5G01180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 63849-65848 Arabidopsis thaliana
AT5G01180 2.0kb downstream 2.0kb downstream 4832 true Chr5: 59017-63848 Arabidopsis thaliana
AT5G01180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 59017-61016 Arabidopsis thaliana
AT5G01180 5.0kb upstream 5.0kb upstream 7832 true Chr5: 61017-68848 Arabidopsis thaliana
AT5G01180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 63849-68848 Arabidopsis thaliana
AT5G01180 5.0kb downstream 5.0kb downstream 7832 true Chr5: 56017-63848 Arabidopsis thaliana
AT5G01180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 56017-61016 Arabidopsis thaliana
AT5G01180 10.0kb upstream 10.0kb upstream 12832 true Chr5: 61017-73848 Arabidopsis thaliana
AT5G01180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 63849-73848 Arabidopsis thaliana
AT5G01180 10.0kb downstream 10.0kb downstream 12832 true Chr5: 51017-63848 Arabidopsis thaliana
AT5G01180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 51017-61016 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376727 5261 Brassicaceae View MSA
123836861 5264 Brassicales-Malvales View MSA
124340673 5266 SBM View MSA
124246059 5268 Malvidae View MSA
124065888 5270 Rosid View MSA
123751146 5271 Pentapetalae View MSA
122796632 5272 Eudicot View MSA
122045333 5273 Angiosperm View MSA
121350655 5274 Embryophyte View MSA
123428779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.465        
cufflinks 0.199     Low  
cufflinks 0.919       High
cufflinks 0.135     Low Low
cufflinks 0.762        
cufflinks 0.25     Low  

0 Strain