Gene : HB16 A. thaliana TAIR10
Primary Identifier:  ? AT4G40060 Defline:  (1 of 3) PTHR24326//PTHR24326:SF196 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-16-RELATED
Genomic Order:  4124 Name:  ? AT4G40060
Secondary Identifier:  ? PAC:19645446
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G40060 0.5kb upstream 0.5kb upstream 2226 true Chr4: 18571359-18573584 Arabidopsis thaliana
AT4G40060 0.5kb upstream 0.5kb upstream 500 false Chr4: 18573085-18573584 Arabidopsis thaliana
AT4G40060 0.5kb downstream 0.5kb downstream 2226 true Chr4: 18570859-18573084 Arabidopsis thaliana
AT4G40060 0.5kb downstream 0.5kb downstream 500 false Chr4: 18570859-18571358 Arabidopsis thaliana
AT4G40060 1.0kb upstream 1.0kb upstream 2726 true Chr4: 18571359-18574084 Arabidopsis thaliana
AT4G40060 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18573085-18574084 Arabidopsis thaliana
AT4G40060 1.0kb downstream 1.0kb downstream 2726 true Chr4: 18570359-18573084 Arabidopsis thaliana
AT4G40060 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18570359-18571358 Arabidopsis thaliana
AT4G40060 2.0kb upstream 2.0kb upstream 3726 true Chr4: 18571359-18575084 Arabidopsis thaliana
AT4G40060 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18573085-18575084 Arabidopsis thaliana
AT4G40060 2.0kb downstream 2.0kb downstream 3726 true Chr4: 18569359-18573084 Arabidopsis thaliana
AT4G40060 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18569359-18571358 Arabidopsis thaliana
AT4G40060 5.0kb upstream 5.0kb upstream 6726 true Chr4: 18571359-18578084 Arabidopsis thaliana
AT4G40060 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18573085-18578084 Arabidopsis thaliana
AT4G40060 5.0kb downstream 5.0kb downstream 6726 true Chr4: 18566359-18573084 Arabidopsis thaliana
AT4G40060 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18566359-18571358 Arabidopsis thaliana
AT4G40060 10.0kb upstream 10.0kb upstream 11726 true Chr4: 18571359-18583084 Arabidopsis thaliana
AT4G40060 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18573085-18583084 Arabidopsis thaliana
AT4G40060 10.0kb downstream 10.0kb downstream 11726 true Chr4: 18561359-18573084 Arabidopsis thaliana
AT4G40060 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18561359-18571358 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366312 5261 Brassicaceae View MSA
123799148 5264 Brassicales-Malvales View MSA
124296697 5266 SBM View MSA
124253703 5268 Malvidae View MSA
124072423 5270 Rosid View MSA
123750844 5271 Pentapetalae View MSA
122791201 5272 Eudicot View MSA
122049195 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.819        
cufflinks 65.415     High  
cufflinks 20.21        
cufflinks 74.824     High High
cufflinks 14.222       Low
cufflinks 53.764     High  

0 Strain