Gene : AT4G40000 A. thaliana TAIR10
Defline:  (1 of 3) 2.1.1.203 - tRNA (cytosine(34)-C(5))-methyltransferase Genomic Order:  4115
Name:  ? AT4G40000 Secondary Identifier:  ? PAC:19643893
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6829 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G40000 0.5kb upstream 0.5kb upstream 4131 true Chr4: 18543893-18548023 Arabidopsis thaliana
AT4G40000 0.5kb upstream 0.5kb upstream 500 false Chr4: 18547524-18548023 Arabidopsis thaliana
AT4G40000 0.5kb downstream 0.5kb downstream 4131 true Chr4: 18543393-18547523 Arabidopsis thaliana
AT4G40000 0.5kb downstream 0.5kb downstream 500 false Chr4: 18543393-18543892 Arabidopsis thaliana
AT4G40000 1.0kb upstream 1.0kb upstream 4631 true Chr4: 18543893-18548523 Arabidopsis thaliana
AT4G40000 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18547524-18548523 Arabidopsis thaliana
AT4G40000 1.0kb downstream 1.0kb downstream 4631 true Chr4: 18542893-18547523 Arabidopsis thaliana
AT4G40000 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18542893-18543892 Arabidopsis thaliana
AT4G40000 2.0kb upstream 2.0kb upstream 5631 true Chr4: 18543893-18549523 Arabidopsis thaliana
AT4G40000 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18547524-18549523 Arabidopsis thaliana
AT4G40000 2.0kb downstream 2.0kb downstream 5631 true Chr4: 18541893-18547523 Arabidopsis thaliana
AT4G40000 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18541893-18543892 Arabidopsis thaliana
AT4G40000 5.0kb upstream 5.0kb upstream 8631 true Chr4: 18543893-18552523 Arabidopsis thaliana
AT4G40000 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18547524-18552523 Arabidopsis thaliana
AT4G40000 5.0kb downstream 5.0kb downstream 8631 true Chr4: 18538893-18547523 Arabidopsis thaliana
AT4G40000 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18538893-18543892 Arabidopsis thaliana
AT4G40000 10.0kb upstream 10.0kb upstream 13631 true Chr4: 18543893-18557523 Arabidopsis thaliana
AT4G40000 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18547524-18557523 Arabidopsis thaliana
AT4G40000 10.0kb downstream 10.0kb downstream 13631 true Chr4: 18533893-18547523 Arabidopsis thaliana
AT4G40000 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18533893-18543892 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368529 5261 Brassicaceae View MSA
123799592 5264 Brassicales-Malvales View MSA
124297094 5266 SBM View MSA
124251065 5268 Malvidae View MSA
123952562 5270 Rosid View MSA
123530294 5271 Pentapetalae View MSA
122565260 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.237        
cufflinks 3.651        
cufflinks 0.734       Low
cufflinks 3.5        
cufflinks 0.603       Low
cufflinks 3.914        

0 Strain