Gene : AT4G39860 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31132:SF2 - EXPRESSED PROTEIN Genomic Order:  4096
Name:  ? AT4G39860 Secondary Identifier:  ? PAC:19647435
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39860 0.5kb upstream 0.5kb upstream 2390 true Chr4: 18499253-18501642 Arabidopsis thaliana
AT4G39860 0.5kb upstream 0.5kb upstream 500 false Chr4: 18499253-18499752 Arabidopsis thaliana
AT4G39860 0.5kb downstream 0.5kb downstream 2390 true Chr4: 18499753-18502142 Arabidopsis thaliana
AT4G39860 0.5kb downstream 0.5kb downstream 500 false Chr4: 18501643-18502142 Arabidopsis thaliana
AT4G39860 1.0kb upstream 1.0kb upstream 2890 true Chr4: 18498753-18501642 Arabidopsis thaliana
AT4G39860 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18498753-18499752 Arabidopsis thaliana
AT4G39860 1.0kb downstream 1.0kb downstream 2890 true Chr4: 18499753-18502642 Arabidopsis thaliana
AT4G39860 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18501643-18502642 Arabidopsis thaliana
AT4G39860 2.0kb upstream 2.0kb upstream 3890 true Chr4: 18497753-18501642 Arabidopsis thaliana
AT4G39860 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18497753-18499752 Arabidopsis thaliana
AT4G39860 2.0kb downstream 2.0kb downstream 3890 true Chr4: 18499753-18503642 Arabidopsis thaliana
AT4G39860 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18501643-18503642 Arabidopsis thaliana
AT4G39860 5.0kb upstream 5.0kb upstream 6890 true Chr4: 18494753-18501642 Arabidopsis thaliana
AT4G39860 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18494753-18499752 Arabidopsis thaliana
AT4G39860 5.0kb downstream 5.0kb downstream 6890 true Chr4: 18499753-18506642 Arabidopsis thaliana
AT4G39860 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18501643-18506642 Arabidopsis thaliana
AT4G39860 10.0kb upstream 10.0kb upstream 11890 true Chr4: 18489753-18501642 Arabidopsis thaliana
AT4G39860 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18489753-18499752 Arabidopsis thaliana
AT4G39860 10.0kb downstream 10.0kb downstream 11890 true Chr4: 18499753-18511642 Arabidopsis thaliana
AT4G39860 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18501643-18511642 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370500 5261 Brassicaceae View MSA
123830743 5264 Brassicales-Malvales View MSA
124343064 5266 SBM View MSA
124250387 5268 Malvidae View MSA
124064048 5270 Rosid View MSA
123745943 5271 Pentapetalae View MSA
122791019 5272 Eudicot View MSA
122045269 5273 Angiosperm View MSA
121344429 5274 Embryophyte View MSA
123426064 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.167        
cufflinks 7.347        
cufflinks 2.69       Low
cufflinks 7.672        
cufflinks 2.57       Low
cufflinks 8.918       High

0 Strain