Gene : AT4G39840 A. thaliana TAIR10
Defline:  (1 of 1) KOG3116 - Predicted C3H1-type Zn-finger protein Genomic Order:  4094
Name:  ? AT4G39840 Secondary Identifier:  ? PAC:19645757
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39840 0.5kb upstream 0.5kb upstream 2414 true Chr4: 18484401-18486814 Arabidopsis thaliana
AT4G39840 0.5kb upstream 0.5kb upstream 500 false Chr4: 18484401-18484900 Arabidopsis thaliana
AT4G39840 0.5kb downstream 0.5kb downstream 2414 true Chr4: 18484901-18487314 Arabidopsis thaliana
AT4G39840 0.5kb downstream 0.5kb downstream 500 false Chr4: 18486815-18487314 Arabidopsis thaliana
AT4G39840 1.0kb upstream 1.0kb upstream 2914 true Chr4: 18483901-18486814 Arabidopsis thaliana
AT4G39840 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18483901-18484900 Arabidopsis thaliana
AT4G39840 1.0kb downstream 1.0kb downstream 2914 true Chr4: 18484901-18487814 Arabidopsis thaliana
AT4G39840 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18486815-18487814 Arabidopsis thaliana
AT4G39840 2.0kb upstream 2.0kb upstream 3914 true Chr4: 18482901-18486814 Arabidopsis thaliana
AT4G39840 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18482901-18484900 Arabidopsis thaliana
AT4G39840 2.0kb downstream 2.0kb downstream 3914 true Chr4: 18484901-18488814 Arabidopsis thaliana
AT4G39840 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18486815-18488814 Arabidopsis thaliana
AT4G39840 5.0kb upstream 5.0kb upstream 6914 true Chr4: 18479901-18486814 Arabidopsis thaliana
AT4G39840 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18479901-18484900 Arabidopsis thaliana
AT4G39840 5.0kb downstream 5.0kb downstream 6914 true Chr4: 18484901-18491814 Arabidopsis thaliana
AT4G39840 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18486815-18491814 Arabidopsis thaliana
AT4G39840 10.0kb upstream 10.0kb upstream 11914 true Chr4: 18474901-18486814 Arabidopsis thaliana
AT4G39840 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18474901-18484900 Arabidopsis thaliana
AT4G39840 10.0kb downstream 10.0kb downstream 11914 true Chr4: 18484901-18496814 Arabidopsis thaliana
AT4G39840 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18486815-18496814 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379819 5261 Brassicaceae View MSA
123832632 5264 Brassicales-Malvales View MSA
124341954 5266 SBM View MSA
124247451 5268 Malvidae View MSA
124050391 5270 Rosid View MSA
123747587 5271 Pentapetalae View MSA
122791457 5272 Eudicot View MSA
122044474 5273 Angiosperm View MSA
121310300 5274 Embryophyte View MSA
123347823 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.779        
cufflinks 36.501     High  
cufflinks 18.769        
cufflinks 34.275     High  
cufflinks 13.022       Low
cufflinks 39.93     High  

0 Strain