Gene : AT4G39530 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4058
Name:  ? AT4G39530 Secondary Identifier:  ? PAC:19645329
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39530 0.5kb upstream 0.5kb upstream 3005 true Chr4: 18374736-18377740 Arabidopsis thaliana
AT4G39530 0.5kb upstream 0.5kb upstream 500 false Chr4: 18377241-18377740 Arabidopsis thaliana
AT4G39530 0.5kb downstream 0.5kb downstream 3005 true Chr4: 18374236-18377240 Arabidopsis thaliana
AT4G39530 0.5kb downstream 0.5kb downstream 500 false Chr4: 18374236-18374735 Arabidopsis thaliana
AT4G39530 1.0kb upstream 1.0kb upstream 3505 true Chr4: 18374736-18378240 Arabidopsis thaliana
AT4G39530 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18377241-18378240 Arabidopsis thaliana
AT4G39530 1.0kb downstream 1.0kb downstream 3505 true Chr4: 18373736-18377240 Arabidopsis thaliana
AT4G39530 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18373736-18374735 Arabidopsis thaliana
AT4G39530 2.0kb upstream 2.0kb upstream 4505 true Chr4: 18374736-18379240 Arabidopsis thaliana
AT4G39530 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18377241-18379240 Arabidopsis thaliana
AT4G39530 2.0kb downstream 2.0kb downstream 4505 true Chr4: 18372736-18377240 Arabidopsis thaliana
AT4G39530 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18372736-18374735 Arabidopsis thaliana
AT4G39530 5.0kb upstream 5.0kb upstream 7505 true Chr4: 18374736-18382240 Arabidopsis thaliana
AT4G39530 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18377241-18382240 Arabidopsis thaliana
AT4G39530 5.0kb downstream 5.0kb downstream 7505 true Chr4: 18369736-18377240 Arabidopsis thaliana
AT4G39530 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18369736-18374735 Arabidopsis thaliana
AT4G39530 10.0kb upstream 10.0kb upstream 12505 true Chr4: 18374736-18387240 Arabidopsis thaliana
AT4G39530 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18377241-18387240 Arabidopsis thaliana
AT4G39530 10.0kb downstream 10.0kb downstream 12505 true Chr4: 18364736-18377240 Arabidopsis thaliana
AT4G39530 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18364736-18374735 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374652 5261 Brassicaceae View MSA
123828770 5264 Brassicales-Malvales View MSA
124338071 5266 SBM View MSA
124246934 5268 Malvidae View MSA
124061137 5270 Rosid View MSA
123742346 5271 Pentapetalae View MSA
122794962 5272 Eudicot View MSA
122044957 5273 Angiosperm View MSA
121352585 5274 Embryophyte View MSA
123382887 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.641       High
cufflinks 1.035        
cufflinks 0.883        
cufflinks 1.116        
cufflinks 0.681       Low
cufflinks 1.094        

0 Strain