Gene : EMB2453 A. thaliana TAIR10
Primary Identifier:  ? AT4G39620 Defline:  (1 of 24) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3)
Genomic Order:  4067 Name:  ? AT4G39620
Secondary Identifier:  ? PAC:19646226
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39620 0.5kb upstream 0.5kb upstream 2785 true Chr4: 18394794-18397578 Arabidopsis thaliana
AT4G39620 0.5kb upstream 0.5kb upstream 500 false Chr4: 18394794-18395293 Arabidopsis thaliana
AT4G39620 0.5kb downstream 0.5kb downstream 2785 true Chr4: 18395294-18398078 Arabidopsis thaliana
AT4G39620 0.5kb downstream 0.5kb downstream 500 false Chr4: 18397579-18398078 Arabidopsis thaliana
AT4G39620 1.0kb upstream 1.0kb upstream 3285 true Chr4: 18394294-18397578 Arabidopsis thaliana
AT4G39620 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18394294-18395293 Arabidopsis thaliana
AT4G39620 1.0kb downstream 1.0kb downstream 3285 true Chr4: 18395294-18398578 Arabidopsis thaliana
AT4G39620 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18397579-18398578 Arabidopsis thaliana
AT4G39620 2.0kb upstream 2.0kb upstream 4285 true Chr4: 18393294-18397578 Arabidopsis thaliana
AT4G39620 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18393294-18395293 Arabidopsis thaliana
AT4G39620 2.0kb downstream 2.0kb downstream 4285 true Chr4: 18395294-18399578 Arabidopsis thaliana
AT4G39620 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18397579-18399578 Arabidopsis thaliana
AT4G39620 5.0kb upstream 5.0kb upstream 7285 true Chr4: 18390294-18397578 Arabidopsis thaliana
AT4G39620 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18390294-18395293 Arabidopsis thaliana
AT4G39620 5.0kb downstream 5.0kb downstream 7285 true Chr4: 18395294-18402578 Arabidopsis thaliana
AT4G39620 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18397579-18402578 Arabidopsis thaliana
AT4G39620 10.0kb upstream 10.0kb upstream 12285 true Chr4: 18385294-18397578 Arabidopsis thaliana
AT4G39620 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18385294-18395293 Arabidopsis thaliana
AT4G39620 10.0kb downstream 10.0kb downstream 12285 true Chr4: 18395294-18407578 Arabidopsis thaliana
AT4G39620 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18397579-18407578 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364166 5261 Brassicaceae View MSA
123830120 5264 Brassicales-Malvales View MSA
124340228 5266 SBM View MSA
124239716 5268 Malvidae View MSA
124065568 5270 Rosid View MSA
123738247 5271 Pentapetalae View MSA
122787727 5272 Eudicot View MSA
122046290 5273 Angiosperm View MSA
121345474 5274 Embryophyte View MSA
123380225 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.265        
cufflinks 2.163        
cufflinks 7.459       High
cufflinks 2.387        
cufflinks 6.047        
cufflinks 2.215        

0 Strain