Gene : AT4G39280 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11538:SF40 - PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT Genomic Order:  4036
Name:  ? AT4G39280 Secondary Identifier:  ? PAC:19648219
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39280 0.5kb upstream 0.5kb upstream 5333 true Chr4: 18280098-18285430 Arabidopsis thaliana
AT4G39280 0.5kb upstream 0.5kb upstream 500 false Chr4: 18284931-18285430 Arabidopsis thaliana
AT4G39280 0.5kb downstream 0.5kb downstream 5333 true Chr4: 18279598-18284930 Arabidopsis thaliana
AT4G39280 0.5kb downstream 0.5kb downstream 500 false Chr4: 18279598-18280097 Arabidopsis thaliana
AT4G39280 1.0kb upstream 1.0kb upstream 5833 true Chr4: 18280098-18285930 Arabidopsis thaliana
AT4G39280 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18284931-18285930 Arabidopsis thaliana
AT4G39280 1.0kb downstream 1.0kb downstream 5833 true Chr4: 18279098-18284930 Arabidopsis thaliana
AT4G39280 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18279098-18280097 Arabidopsis thaliana
AT4G39280 2.0kb upstream 2.0kb upstream 6833 true Chr4: 18280098-18286930 Arabidopsis thaliana
AT4G39280 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18284931-18286930 Arabidopsis thaliana
AT4G39280 2.0kb downstream 2.0kb downstream 6833 true Chr4: 18278098-18284930 Arabidopsis thaliana
AT4G39280 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18278098-18280097 Arabidopsis thaliana
AT4G39280 5.0kb upstream 5.0kb upstream 9833 true Chr4: 18280098-18289930 Arabidopsis thaliana
AT4G39280 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18284931-18289930 Arabidopsis thaliana
AT4G39280 5.0kb downstream 5.0kb downstream 9833 true Chr4: 18275098-18284930 Arabidopsis thaliana
AT4G39280 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18275098-18280097 Arabidopsis thaliana
AT4G39280 10.0kb upstream 10.0kb upstream 14833 true Chr4: 18280098-18294930 Arabidopsis thaliana
AT4G39280 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18284931-18294930 Arabidopsis thaliana
AT4G39280 10.0kb downstream 10.0kb downstream 14833 true Chr4: 18270098-18284930 Arabidopsis thaliana
AT4G39280 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18270098-18280097 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040985 5273 Angiosperm View MSA
122381699 5261 Brassicaceae View MSA
123829399 5264 Brassicales-Malvales View MSA
124337163 5266 SBM View MSA
124242019 5268 Malvidae View MSA
124067851 5270 Rosid View MSA
123744864 5271 Pentapetalae View MSA
122791100 5272 Eudicot View MSA
121346168 5274 Embryophyte View MSA
123424573 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.549        
cufflinks 5.844        
cufflinks 5.455        
cufflinks 6.196        
cufflinks 5.173       Low
cufflinks 7.285       High

0 Strain