Gene : HD2C A. thaliana TAIR10
Primary Identifier:  ? AT5G03740 Defline:  (1 of 3) PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED
Genomic Order:  292 Name:  ? AT5G03740
Secondary Identifier:  ? PAC:19667439
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G03740 0.5kb upstream 0.5kb upstream 2825 true Chr5: 981376-984200 Arabidopsis thaliana
AT5G03740 0.5kb upstream 0.5kb upstream 500 false Chr5: 981376-981875 Arabidopsis thaliana
AT5G03740 0.5kb downstream 0.5kb downstream 2825 true Chr5: 981876-984700 Arabidopsis thaliana
AT5G03740 0.5kb downstream 0.5kb downstream 500 false Chr5: 984201-984700 Arabidopsis thaliana
AT5G03740 1.0kb upstream 1.0kb upstream 3325 true Chr5: 980876-984200 Arabidopsis thaliana
AT5G03740 1.0kb upstream 1.0kb upstream 1000 false Chr5: 980876-981875 Arabidopsis thaliana
AT5G03740 1.0kb downstream 1.0kb downstream 3325 true Chr5: 981876-985200 Arabidopsis thaliana
AT5G03740 1.0kb downstream 1.0kb downstream 1000 false Chr5: 984201-985200 Arabidopsis thaliana
AT5G03740 2.0kb upstream 2.0kb upstream 4325 true Chr5: 979876-984200 Arabidopsis thaliana
AT5G03740 2.0kb upstream 2.0kb upstream 2000 false Chr5: 979876-981875 Arabidopsis thaliana
AT5G03740 2.0kb downstream 2.0kb downstream 4325 true Chr5: 981876-986200 Arabidopsis thaliana
AT5G03740 2.0kb downstream 2.0kb downstream 2000 false Chr5: 984201-986200 Arabidopsis thaliana
AT5G03740 5.0kb upstream 5.0kb upstream 7325 true Chr5: 976876-984200 Arabidopsis thaliana
AT5G03740 5.0kb upstream 5.0kb upstream 5000 false Chr5: 976876-981875 Arabidopsis thaliana
AT5G03740 5.0kb downstream 5.0kb downstream 7325 true Chr5: 981876-989200 Arabidopsis thaliana
AT5G03740 5.0kb downstream 5.0kb downstream 5000 false Chr5: 984201-989200 Arabidopsis thaliana
AT5G03740 10.0kb upstream 10.0kb upstream 12325 true Chr5: 971876-984200 Arabidopsis thaliana
AT5G03740 10.0kb upstream 10.0kb upstream 10000 false Chr5: 971876-981875 Arabidopsis thaliana
AT5G03740 10.0kb downstream 10.0kb downstream 12325 true Chr5: 981876-994200 Arabidopsis thaliana
AT5G03740 10.0kb downstream 10.0kb downstream 10000 false Chr5: 984201-994200 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363736 5261 Brassicaceae View MSA
123839233 5264 Brassicales-Malvales View MSA
124343902 5266 SBM View MSA
124252646 5268 Malvidae View MSA
124068201 5270 Rosid View MSA
123749750 5271 Pentapetalae View MSA
122797243 5272 Eudicot View MSA
122051478 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121349885 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.042        
cufflinks 29.894     High  
cufflinks 15.447       Low
cufflinks 29.668        
cufflinks 15.228       Low
cufflinks 31.764     High High

0 Strain