Gene : AT5G03330 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12419//PTHR12419:SF19 - OTU DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  244
Name:  ? AT5G03330 Secondary Identifier:  ? PAC:19671972
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G03330 0.5kb upstream 0.5kb upstream 3316 true Chr5: 806464-809779 Arabidopsis thaliana
AT5G03330 0.5kb upstream 0.5kb upstream 500 false Chr5: 806464-806963 Arabidopsis thaliana
AT5G03330 0.5kb downstream 0.5kb downstream 3316 true Chr5: 806964-810279 Arabidopsis thaliana
AT5G03330 0.5kb downstream 0.5kb downstream 500 false Chr5: 809780-810279 Arabidopsis thaliana
AT5G03330 1.0kb upstream 1.0kb upstream 3816 true Chr5: 805964-809779 Arabidopsis thaliana
AT5G03330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 805964-806963 Arabidopsis thaliana
AT5G03330 1.0kb downstream 1.0kb downstream 3816 true Chr5: 806964-810779 Arabidopsis thaliana
AT5G03330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 809780-810779 Arabidopsis thaliana
AT5G03330 2.0kb upstream 2.0kb upstream 4816 true Chr5: 804964-809779 Arabidopsis thaliana
AT5G03330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 804964-806963 Arabidopsis thaliana
AT5G03330 2.0kb downstream 2.0kb downstream 4816 true Chr5: 806964-811779 Arabidopsis thaliana
AT5G03330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 809780-811779 Arabidopsis thaliana
AT5G03330 5.0kb upstream 5.0kb upstream 7816 true Chr5: 801964-809779 Arabidopsis thaliana
AT5G03330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 801964-806963 Arabidopsis thaliana
AT5G03330 5.0kb downstream 5.0kb downstream 7816 true Chr5: 806964-814779 Arabidopsis thaliana
AT5G03330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 809780-814779 Arabidopsis thaliana
AT5G03330 10.0kb upstream 10.0kb upstream 12816 true Chr5: 796964-809779 Arabidopsis thaliana
AT5G03330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 796964-806963 Arabidopsis thaliana
AT5G03330 10.0kb downstream 10.0kb downstream 12816 true Chr5: 806964-819779 Arabidopsis thaliana
AT5G03330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 809780-819779 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367721 5261 Brassicaceae View MSA
123835330 5264 Brassicales-Malvales View MSA
124344152 5266 SBM View MSA
124237995 5268 Malvidae View MSA
124072219 5270 Rosid View MSA
123743617 5271 Pentapetalae View MSA
122787682 5272 Eudicot View MSA
122042328 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.852       High
cufflinks 4.348        
cufflinks 3.552       Low
cufflinks 4.265        
cufflinks 4.237        
cufflinks 4.188        

0 Strain