Gene : AT5G03406 A. thaliana TAIR10
Defline:  (1 of 3) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  253
Name:  ? AT5G03406 Secondary Identifier:  ? PAC:19668640
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G03406 0.5kb upstream 0.5kb upstream 2491 true Chr5: 839385-841875 Arabidopsis thaliana
AT5G03406 0.5kb upstream 0.5kb upstream 500 false Chr5: 839385-839884 Arabidopsis thaliana
AT5G03406 0.5kb downstream 0.5kb downstream 2491 true Chr5: 839885-842375 Arabidopsis thaliana
AT5G03406 0.5kb downstream 0.5kb downstream 500 false Chr5: 841876-842375 Arabidopsis thaliana
AT5G03406 1.0kb upstream 1.0kb upstream 2991 true Chr5: 838885-841875 Arabidopsis thaliana
AT5G03406 1.0kb upstream 1.0kb upstream 1000 false Chr5: 838885-839884 Arabidopsis thaliana
AT5G03406 1.0kb downstream 1.0kb downstream 2991 true Chr5: 839885-842875 Arabidopsis thaliana
AT5G03406 1.0kb downstream 1.0kb downstream 1000 false Chr5: 841876-842875 Arabidopsis thaliana
AT5G03406 2.0kb upstream 2.0kb upstream 3991 true Chr5: 837885-841875 Arabidopsis thaliana
AT5G03406 2.0kb upstream 2.0kb upstream 2000 false Chr5: 837885-839884 Arabidopsis thaliana
AT5G03406 2.0kb downstream 2.0kb downstream 3991 true Chr5: 839885-843875 Arabidopsis thaliana
AT5G03406 2.0kb downstream 2.0kb downstream 2000 false Chr5: 841876-843875 Arabidopsis thaliana
AT5G03406 5.0kb upstream 5.0kb upstream 6991 true Chr5: 834885-841875 Arabidopsis thaliana
AT5G03406 5.0kb upstream 5.0kb upstream 5000 false Chr5: 834885-839884 Arabidopsis thaliana
AT5G03406 5.0kb downstream 5.0kb downstream 6991 true Chr5: 839885-846875 Arabidopsis thaliana
AT5G03406 5.0kb downstream 5.0kb downstream 5000 false Chr5: 841876-846875 Arabidopsis thaliana
AT5G03406 10.0kb upstream 10.0kb upstream 11991 true Chr5: 829885-841875 Arabidopsis thaliana
AT5G03406 10.0kb upstream 10.0kb upstream 10000 false Chr5: 829885-839884 Arabidopsis thaliana
AT5G03406 10.0kb downstream 10.0kb downstream 11991 true Chr5: 839885-851875 Arabidopsis thaliana
AT5G03406 10.0kb downstream 10.0kb downstream 10000 false Chr5: 841876-851875 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121535453 5273 Angiosperm View MSA
122331143 5261 Brassicaceae Singleton cluster - no MSA
123772346 5264 Brassicales-Malvales Singleton cluster - no MSA
124346865 5266 SBM View MSA
124180925 5268 Malvidae View MSA
123903067 5270 Rosid View MSA
123484734 5271 Pentapetalae View MSA
122519962 5272 Eudicot View MSA
120808215 5274 Embryophyte View MSA
122849768 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.836        
cufflinks 4.787       High
cufflinks 3.844        
cufflinks 4.551        
cufflinks 4.248        
cufflinks 3.579       Low

0 Strain