Gene : AT5G02830 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  193
Name:  ? AT5G02830 Secondary Identifier:  ? PAC:19666327
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G02830 0.5kb upstream 0.5kb upstream 4688 true Chr5: 644279-648966 Arabidopsis thaliana
AT5G02830 0.5kb upstream 0.5kb upstream 500 false Chr5: 648467-648966 Arabidopsis thaliana
AT5G02830 0.5kb downstream 0.5kb downstream 4688 true Chr5: 643779-648466 Arabidopsis thaliana
AT5G02830 0.5kb downstream 0.5kb downstream 500 false Chr5: 643779-644278 Arabidopsis thaliana
AT5G02830 1.0kb upstream 1.0kb upstream 5188 true Chr5: 644279-649466 Arabidopsis thaliana
AT5G02830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 648467-649466 Arabidopsis thaliana
AT5G02830 1.0kb downstream 1.0kb downstream 5188 true Chr5: 643279-648466 Arabidopsis thaliana
AT5G02830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 643279-644278 Arabidopsis thaliana
AT5G02830 2.0kb upstream 2.0kb upstream 6188 true Chr5: 644279-650466 Arabidopsis thaliana
AT5G02830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 648467-650466 Arabidopsis thaliana
AT5G02830 2.0kb downstream 2.0kb downstream 6188 true Chr5: 642279-648466 Arabidopsis thaliana
AT5G02830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 642279-644278 Arabidopsis thaliana
AT5G02830 5.0kb upstream 5.0kb upstream 9188 true Chr5: 644279-653466 Arabidopsis thaliana
AT5G02830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 648467-653466 Arabidopsis thaliana
AT5G02830 5.0kb downstream 5.0kb downstream 9188 true Chr5: 639279-648466 Arabidopsis thaliana
AT5G02830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 639279-644278 Arabidopsis thaliana
AT5G02830 10.0kb upstream 10.0kb upstream 14188 true Chr5: 644279-658466 Arabidopsis thaliana
AT5G02830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 648467-658466 Arabidopsis thaliana
AT5G02830 10.0kb downstream 10.0kb downstream 14188 true Chr5: 634279-648466 Arabidopsis thaliana
AT5G02830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 634279-644278 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368087 5261 Brassicaceae View MSA
123830393 5264 Brassicales-Malvales View MSA
124336842 5266 SBM View MSA
124241892 5268 Malvidae View MSA
124068015 5270 Rosid View MSA
123738487 5271 Pentapetalae View MSA
122789712 5272 Eudicot View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.364        
cufflinks 1.262        
cufflinks 9.407       High
cufflinks 1.223        
cufflinks 5.497        
cufflinks 0.817       Low

0 Strain