Gene : AT5G02860 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  196
Name:  ? AT5G02860 Secondary Identifier:  ? PAC:19669472
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G02860 0.5kb upstream 0.5kb upstream 2960 true Chr5: 653602-656561 Arabidopsis thaliana
AT5G02860 0.5kb upstream 0.5kb upstream 500 false Chr5: 653602-654101 Arabidopsis thaliana
AT5G02860 0.5kb downstream 0.5kb downstream 2960 true Chr5: 654102-657061 Arabidopsis thaliana
AT5G02860 0.5kb downstream 0.5kb downstream 500 false Chr5: 656562-657061 Arabidopsis thaliana
AT5G02860 1.0kb upstream 1.0kb upstream 3460 true Chr5: 653102-656561 Arabidopsis thaliana
AT5G02860 1.0kb upstream 1.0kb upstream 1000 false Chr5: 653102-654101 Arabidopsis thaliana
AT5G02860 1.0kb downstream 1.0kb downstream 3460 true Chr5: 654102-657561 Arabidopsis thaliana
AT5G02860 1.0kb downstream 1.0kb downstream 1000 false Chr5: 656562-657561 Arabidopsis thaliana
AT5G02860 2.0kb upstream 2.0kb upstream 4460 true Chr5: 652102-656561 Arabidopsis thaliana
AT5G02860 2.0kb upstream 2.0kb upstream 2000 false Chr5: 652102-654101 Arabidopsis thaliana
AT5G02860 2.0kb downstream 2.0kb downstream 4460 true Chr5: 654102-658561 Arabidopsis thaliana
AT5G02860 2.0kb downstream 2.0kb downstream 2000 false Chr5: 656562-658561 Arabidopsis thaliana
AT5G02860 5.0kb upstream 5.0kb upstream 7460 true Chr5: 649102-656561 Arabidopsis thaliana
AT5G02860 5.0kb upstream 5.0kb upstream 5000 false Chr5: 649102-654101 Arabidopsis thaliana
AT5G02860 5.0kb downstream 5.0kb downstream 7460 true Chr5: 654102-661561 Arabidopsis thaliana
AT5G02860 5.0kb downstream 5.0kb downstream 5000 false Chr5: 656562-661561 Arabidopsis thaliana
AT5G02860 10.0kb upstream 10.0kb upstream 12460 true Chr5: 644102-656561 Arabidopsis thaliana
AT5G02860 10.0kb upstream 10.0kb upstream 10000 false Chr5: 644102-654101 Arabidopsis thaliana
AT5G02860 10.0kb downstream 10.0kb downstream 12460 true Chr5: 654102-666561 Arabidopsis thaliana
AT5G02860 10.0kb downstream 10.0kb downstream 10000 false Chr5: 656562-666561 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367636 5261 Brassicaceae View MSA
123830512 5264 Brassicales-Malvales View MSA
124341184 5266 SBM View MSA
124244976 5268 Malvidae View MSA
124063650 5270 Rosid View MSA
123744413 5271 Pentapetalae View MSA
122789799 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.873        
cufflinks 5.731        
cufflinks 10.718       High
cufflinks 6.343        
cufflinks 11.159       High
cufflinks 5.08       Low

0 Strain