Gene : AT5G02490 A. thaliana TAIR10
Defline:  (1 of 4) PTHR19375:SF232 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37E-RELATED Genomic Order:  157
Name:  ? AT5G02490 Secondary Identifier:  ? PAC:19673328
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G02490 0.5kb upstream 0.5kb upstream 3113 true Chr5: 550035-553147 Arabidopsis thaliana
AT5G02490 0.5kb upstream 0.5kb upstream 500 false Chr5: 552648-553147 Arabidopsis thaliana
AT5G02490 0.5kb downstream 0.5kb downstream 3113 true Chr5: 549535-552647 Arabidopsis thaliana
AT5G02490 0.5kb downstream 0.5kb downstream 500 false Chr5: 549535-550034 Arabidopsis thaliana
AT5G02490 1.0kb upstream 1.0kb upstream 3613 true Chr5: 550035-553647 Arabidopsis thaliana
AT5G02490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 552648-553647 Arabidopsis thaliana
AT5G02490 1.0kb downstream 1.0kb downstream 3613 true Chr5: 549035-552647 Arabidopsis thaliana
AT5G02490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 549035-550034 Arabidopsis thaliana
AT5G02490 2.0kb upstream 2.0kb upstream 4613 true Chr5: 550035-554647 Arabidopsis thaliana
AT5G02490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 552648-554647 Arabidopsis thaliana
AT5G02490 2.0kb downstream 2.0kb downstream 4613 true Chr5: 548035-552647 Arabidopsis thaliana
AT5G02490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 548035-550034 Arabidopsis thaliana
AT5G02490 5.0kb upstream 5.0kb upstream 7613 true Chr5: 550035-557647 Arabidopsis thaliana
AT5G02490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 552648-557647 Arabidopsis thaliana
AT5G02490 5.0kb downstream 5.0kb downstream 7613 true Chr5: 545035-552647 Arabidopsis thaliana
AT5G02490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 545035-550034 Arabidopsis thaliana
AT5G02490 10.0kb upstream 10.0kb upstream 12613 true Chr5: 550035-562647 Arabidopsis thaliana
AT5G02490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 552648-562647 Arabidopsis thaliana
AT5G02490 10.0kb downstream 10.0kb downstream 12613 true Chr5: 540035-552647 Arabidopsis thaliana
AT5G02490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 540035-550034 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380761 5261 Brassicaceae View MSA
123838654 5264 Brassicales-Malvales View MSA
124351260 5266 SBM View MSA
124251706 5268 Malvidae View MSA
124071606 5270 Rosid View MSA
123753199 5271 Pentapetalae View MSA
122797693 5272 Eudicot View MSA
122051630 5273 Angiosperm View MSA
121350405 5274 Embryophyte View MSA
123428541 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.519     High High
cufflinks 21.08        
cufflinks 4.39       Low
cufflinks 16.123        
cufflinks 7.409        
cufflinks 43.49     High  

0 Strain