Gene : AT5G02060 A. thaliana TAIR10

Defline:  (1 of 39) PF04535 - Domain of unknown function (DUF588) (DUF588) Genomic Order:  115
Name:  ? AT5G02060 Secondary Identifier:  ? PAC:19670147

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G02060 0.5kb upstream 0.5kb upstream 1748 true Chr5: 404064-405811 Arabidopsis thaliana
AT5G02060 0.5kb upstream 0.5kb upstream 500 false Chr5: 404064-404563 Arabidopsis thaliana
AT5G02060 0.5kb downstream 0.5kb downstream 1748 true Chr5: 404564-406311 Arabidopsis thaliana
AT5G02060 0.5kb downstream 0.5kb downstream 500 false Chr5: 405812-406311 Arabidopsis thaliana
AT5G02060 1.0kb upstream 1.0kb upstream 2248 true Chr5: 403564-405811 Arabidopsis thaliana
AT5G02060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 403564-404563 Arabidopsis thaliana
AT5G02060 1.0kb downstream 1.0kb downstream 2248 true Chr5: 404564-406811 Arabidopsis thaliana
AT5G02060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 405812-406811 Arabidopsis thaliana
AT5G02060 2.0kb upstream 2.0kb upstream 3248 true Chr5: 402564-405811 Arabidopsis thaliana
AT5G02060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 402564-404563 Arabidopsis thaliana
AT5G02060 2.0kb downstream 2.0kb downstream 3248 true Chr5: 404564-407811 Arabidopsis thaliana
AT5G02060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 405812-407811 Arabidopsis thaliana
AT5G02060 5.0kb upstream 5.0kb upstream 6248 true Chr5: 399564-405811 Arabidopsis thaliana
AT5G02060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 399564-404563 Arabidopsis thaliana
AT5G02060 5.0kb downstream 5.0kb downstream 6248 true Chr5: 404564-410811 Arabidopsis thaliana
AT5G02060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 405812-410811 Arabidopsis thaliana
AT5G02060 10.0kb upstream 10.0kb upstream 11248 true Chr5: 394564-405811 Arabidopsis thaliana
AT5G02060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 394564-404563 Arabidopsis thaliana
AT5G02060 10.0kb downstream 10.0kb downstream 11248 true Chr5: 404564-415811 Arabidopsis thaliana
AT5G02060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 405812-415811 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368003 5261 Brassicaceae View MSA
123799466 5264 Brassicales-Malvales View MSA
124296984 5266 SBM View MSA
124148993 5268 Malvidae View MSA
124063057 5270 Rosid View MSA
123740553 5271 Pentapetalae View MSA
122796755 5272 Eudicot View MSA
122043867 5273 Angiosperm View MSA
121310202 5274 Embryophyte View MSA
123347759 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.365        
cufflinks 1.913        
cufflinks 1.809        
cufflinks 2.648       High
cufflinks 1.603       Low
cufflinks 2.335        

0 Strain