Gene : AT5G01940 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23001//PTHR23001:SF3 - EUKARYOTIC TRANSLATION INITIATION FACTOR // EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 2 Genomic Order:  102
Name:  ? AT5G01940 Secondary Identifier:  ? PAC:19670772
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01940 0.5kb upstream 0.5kb upstream 1676 true Chr5: 363594-365269 Arabidopsis thaliana
AT5G01940 0.5kb upstream 0.5kb upstream 500 false Chr5: 364770-365269 Arabidopsis thaliana
AT5G01940 0.5kb downstream 0.5kb downstream 1676 true Chr5: 363094-364769 Arabidopsis thaliana
AT5G01940 0.5kb downstream 0.5kb downstream 500 false Chr5: 363094-363593 Arabidopsis thaliana
AT5G01940 1.0kb upstream 1.0kb upstream 2176 true Chr5: 363594-365769 Arabidopsis thaliana
AT5G01940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 364770-365769 Arabidopsis thaliana
AT5G01940 1.0kb downstream 1.0kb downstream 2176 true Chr5: 362594-364769 Arabidopsis thaliana
AT5G01940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 362594-363593 Arabidopsis thaliana
AT5G01940 2.0kb upstream 2.0kb upstream 3176 true Chr5: 363594-366769 Arabidopsis thaliana
AT5G01940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 364770-366769 Arabidopsis thaliana
AT5G01940 2.0kb downstream 2.0kb downstream 3176 true Chr5: 361594-364769 Arabidopsis thaliana
AT5G01940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 361594-363593 Arabidopsis thaliana
AT5G01940 5.0kb upstream 5.0kb upstream 6176 true Chr5: 363594-369769 Arabidopsis thaliana
AT5G01940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 364770-369769 Arabidopsis thaliana
AT5G01940 5.0kb downstream 5.0kb downstream 6176 true Chr5: 358594-364769 Arabidopsis thaliana
AT5G01940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 358594-363593 Arabidopsis thaliana
AT5G01940 10.0kb upstream 10.0kb upstream 11176 true Chr5: 363594-374769 Arabidopsis thaliana
AT5G01940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 364770-374769 Arabidopsis thaliana
AT5G01940 10.0kb downstream 10.0kb downstream 11176 true Chr5: 353594-364769 Arabidopsis thaliana
AT5G01940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 353594-363593 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511434 5273 Angiosperm View MSA
122376166 5261 Brassicaceae View MSA
123801160 5264 Brassicales-Malvales View MSA
124298496 5266 SBM View MSA
124150125 5268 Malvidae View MSA
123875801 5270 Rosid View MSA
123459570 5271 Pentapetalae View MSA
122494960 5272 Eudicot View MSA
120784481 5274 Embryophyte View MSA
122826392 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.621       Low
cufflinks 4.592       High
cufflinks 1.809        
cufflinks 4.443        
cufflinks 2.204        
cufflinks 3.94        

0 Strain