Gene : SYN1 A. thaliana TAIR10
Primary Identifier:  ? AT5G05490 Defline:  (1 of 1) PTHR12585//PTHR12585:SF26 - SCC1 / RAD21 FAMILY MEMBER // SISTER CHROMATID COHESION 1 PROTEIN 1
Genomic Order:  476 Name:  ? AT5G05490
Secondary Identifier:  ? PAC:19671298
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05490 0.5kb upstream 0.5kb upstream 5564 true Chr5: 1623706-1629269 Arabidopsis thaliana
AT5G05490 0.5kb upstream 0.5kb upstream 500 false Chr5: 1623706-1624205 Arabidopsis thaliana
AT5G05490 0.5kb downstream 0.5kb downstream 5564 true Chr5: 1624206-1629769 Arabidopsis thaliana
AT5G05490 0.5kb downstream 0.5kb downstream 500 false Chr5: 1629270-1629769 Arabidopsis thaliana
AT5G05490 1.0kb upstream 1.0kb upstream 6064 true Chr5: 1623206-1629269 Arabidopsis thaliana
AT5G05490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1623206-1624205 Arabidopsis thaliana
AT5G05490 1.0kb downstream 1.0kb downstream 6064 true Chr5: 1624206-1630269 Arabidopsis thaliana
AT5G05490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1629270-1630269 Arabidopsis thaliana
AT5G05490 2.0kb upstream 2.0kb upstream 7064 true Chr5: 1622206-1629269 Arabidopsis thaliana
AT5G05490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1622206-1624205 Arabidopsis thaliana
AT5G05490 2.0kb downstream 2.0kb downstream 7064 true Chr5: 1624206-1631269 Arabidopsis thaliana
AT5G05490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1629270-1631269 Arabidopsis thaliana
AT5G05490 5.0kb upstream 5.0kb upstream 10064 true Chr5: 1619206-1629269 Arabidopsis thaliana
AT5G05490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1619206-1624205 Arabidopsis thaliana
AT5G05490 5.0kb downstream 5.0kb downstream 10064 true Chr5: 1624206-1634269 Arabidopsis thaliana
AT5G05490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1629270-1634269 Arabidopsis thaliana
AT5G05490 10.0kb upstream 10.0kb upstream 15064 true Chr5: 1614206-1629269 Arabidopsis thaliana
AT5G05490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1614206-1624205 Arabidopsis thaliana
AT5G05490 10.0kb downstream 10.0kb downstream 15064 true Chr5: 1624206-1639269 Arabidopsis thaliana
AT5G05490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1629270-1639269 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373302 5261 Brassicaceae View MSA
123835080 5264 Brassicales-Malvales View MSA
124343093 5266 SBM View MSA
124237382 5268 Malvidae View MSA
124060947 5270 Rosid View MSA
123744806 5271 Pentapetalae View MSA
122792997 5272 Eudicot View MSA
122042862 5273 Angiosperm View MSA
121347788 5274 Embryophyte View MSA
123426470 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.023     Low  
cufflinks 0.048     Low  
cufflinks 0.012     Low Low
cufflinks 0.056     Low  
cufflinks 0.013     Low Low
cufflinks 0.068     Low High

0 Strain