Gene : AT5G05460 A. thaliana TAIR10
Defline:  (1 of 2) 3.2.1.96 - Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase / Endo-beta-N-acetylglucosaminidase Genomic Order:  473
Name:  ? AT5G05460 Secondary Identifier:  ? PAC:19672228
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05460 0.5kb upstream 0.5kb upstream 3874 true Chr5: 1615029-1618902 Arabidopsis thaliana
AT5G05460 0.5kb upstream 0.5kb upstream 500 false Chr5: 1615029-1615528 Arabidopsis thaliana
AT5G05460 0.5kb downstream 0.5kb downstream 3874 true Chr5: 1615529-1619402 Arabidopsis thaliana
AT5G05460 0.5kb downstream 0.5kb downstream 500 false Chr5: 1618903-1619402 Arabidopsis thaliana
AT5G05460 1.0kb upstream 1.0kb upstream 4374 true Chr5: 1614529-1618902 Arabidopsis thaliana
AT5G05460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1614529-1615528 Arabidopsis thaliana
AT5G05460 1.0kb downstream 1.0kb downstream 4374 true Chr5: 1615529-1619902 Arabidopsis thaliana
AT5G05460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1618903-1619902 Arabidopsis thaliana
AT5G05460 2.0kb upstream 2.0kb upstream 5374 true Chr5: 1613529-1618902 Arabidopsis thaliana
AT5G05460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1613529-1615528 Arabidopsis thaliana
AT5G05460 2.0kb downstream 2.0kb downstream 5374 true Chr5: 1615529-1620902 Arabidopsis thaliana
AT5G05460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1618903-1620902 Arabidopsis thaliana
AT5G05460 5.0kb upstream 5.0kb upstream 8374 true Chr5: 1610529-1618902 Arabidopsis thaliana
AT5G05460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1610529-1615528 Arabidopsis thaliana
AT5G05460 5.0kb downstream 5.0kb downstream 8374 true Chr5: 1615529-1623902 Arabidopsis thaliana
AT5G05460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1618903-1623902 Arabidopsis thaliana
AT5G05460 10.0kb upstream 10.0kb upstream 13374 true Chr5: 1605529-1618902 Arabidopsis thaliana
AT5G05460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1605529-1615528 Arabidopsis thaliana
AT5G05460 10.0kb downstream 10.0kb downstream 13374 true Chr5: 1615529-1628902 Arabidopsis thaliana
AT5G05460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1618903-1628902 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367690 5261 Brassicaceae View MSA
123838011 5264 Brassicales-Malvales View MSA
124340197 5266 SBM View MSA
124240036 5268 Malvidae View MSA
124065464 5270 Rosid View MSA
123746256 5271 Pentapetalae View MSA
122791374 5272 Eudicot View MSA
122042882 5273 Angiosperm View MSA
121344799 5274 Embryophyte View MSA
123426300 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.72        
cufflinks 6.405        
cufflinks 3.266       Low
cufflinks 9.4       High
cufflinks 6.188        
cufflinks 6.681        

0 Strain