Gene : AT5G05180 A. thaliana TAIR10
Defline:  (1 of 4) PTHR32258:SF4 - KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN Genomic Order:  443
Name:  ? AT5G05180 Secondary Identifier:  ? PAC:19672378
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05180 0.5kb upstream 0.5kb upstream 2767 true Chr5: 1535726-1538492 Arabidopsis thaliana
AT5G05180 0.5kb upstream 0.5kb upstream 500 false Chr5: 1535726-1536225 Arabidopsis thaliana
AT5G05180 0.5kb downstream 0.5kb downstream 2767 true Chr5: 1536226-1538992 Arabidopsis thaliana
AT5G05180 0.5kb downstream 0.5kb downstream 500 false Chr5: 1538493-1538992 Arabidopsis thaliana
AT5G05180 1.0kb upstream 1.0kb upstream 3267 true Chr5: 1535226-1538492 Arabidopsis thaliana
AT5G05180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1535226-1536225 Arabidopsis thaliana
AT5G05180 1.0kb downstream 1.0kb downstream 3267 true Chr5: 1536226-1539492 Arabidopsis thaliana
AT5G05180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1538493-1539492 Arabidopsis thaliana
AT5G05180 2.0kb upstream 2.0kb upstream 4267 true Chr5: 1534226-1538492 Arabidopsis thaliana
AT5G05180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1534226-1536225 Arabidopsis thaliana
AT5G05180 2.0kb downstream 2.0kb downstream 4267 true Chr5: 1536226-1540492 Arabidopsis thaliana
AT5G05180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1538493-1540492 Arabidopsis thaliana
AT5G05180 5.0kb upstream 5.0kb upstream 7267 true Chr5: 1531226-1538492 Arabidopsis thaliana
AT5G05180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1531226-1536225 Arabidopsis thaliana
AT5G05180 5.0kb downstream 5.0kb downstream 7267 true Chr5: 1536226-1543492 Arabidopsis thaliana
AT5G05180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1538493-1543492 Arabidopsis thaliana
AT5G05180 10.0kb upstream 10.0kb upstream 12267 true Chr5: 1526226-1538492 Arabidopsis thaliana
AT5G05180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1526226-1536225 Arabidopsis thaliana
AT5G05180 10.0kb downstream 10.0kb downstream 12267 true Chr5: 1536226-1548492 Arabidopsis thaliana
AT5G05180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1538493-1548492 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365731 5261 Brassicaceae View MSA
123799025 5264 Brassicales-Malvales View MSA
124296589 5266 SBM View MSA
124245367 5268 Malvidae View MSA
124074550 5270 Rosid View MSA
123746032 5271 Pentapetalae View MSA
122788667 5272 Eudicot View MSA
122048617 5273 Angiosperm View MSA
121311040 5274 Embryophyte View MSA
123348394 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.981        
cufflinks 9.508        
cufflinks 2.054        
cufflinks 7.11        
cufflinks 1.586       Low
cufflinks 14.481       High

0 Strain