Gene : AT5G05110 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11413:SF56 - CYSTEINE PROTEINASE INHIBITOR 3-RELATED Genomic Order:  435
Name:  ? AT5G05110 Secondary Identifier:  ? PAC:19670488
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05110 0.5kb upstream 0.5kb upstream 1949 true Chr5: 1507419-1509367 Arabidopsis thaliana
AT5G05110 0.5kb upstream 0.5kb upstream 500 false Chr5: 1508868-1509367 Arabidopsis thaliana
AT5G05110 0.5kb downstream 0.5kb downstream 1949 true Chr5: 1506919-1508867 Arabidopsis thaliana
AT5G05110 0.5kb downstream 0.5kb downstream 500 false Chr5: 1506919-1507418 Arabidopsis thaliana
AT5G05110 1.0kb upstream 1.0kb upstream 2449 true Chr5: 1507419-1509867 Arabidopsis thaliana
AT5G05110 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1508868-1509867 Arabidopsis thaliana
AT5G05110 1.0kb downstream 1.0kb downstream 2449 true Chr5: 1506419-1508867 Arabidopsis thaliana
AT5G05110 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1506419-1507418 Arabidopsis thaliana
AT5G05110 2.0kb upstream 2.0kb upstream 3449 true Chr5: 1507419-1510867 Arabidopsis thaliana
AT5G05110 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1508868-1510867 Arabidopsis thaliana
AT5G05110 2.0kb downstream 2.0kb downstream 3449 true Chr5: 1505419-1508867 Arabidopsis thaliana
AT5G05110 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1505419-1507418 Arabidopsis thaliana
AT5G05110 5.0kb upstream 5.0kb upstream 6449 true Chr5: 1507419-1513867 Arabidopsis thaliana
AT5G05110 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1508868-1513867 Arabidopsis thaliana
AT5G05110 5.0kb downstream 5.0kb downstream 6449 true Chr5: 1502419-1508867 Arabidopsis thaliana
AT5G05110 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1502419-1507418 Arabidopsis thaliana
AT5G05110 10.0kb upstream 10.0kb upstream 11449 true Chr5: 1507419-1518867 Arabidopsis thaliana
AT5G05110 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1508868-1518867 Arabidopsis thaliana
AT5G05110 10.0kb downstream 10.0kb downstream 11449 true Chr5: 1497419-1508867 Arabidopsis thaliana
AT5G05110 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1497419-1507418 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363235 5261 Brassicaceae View MSA
123831133 5264 Brassicales-Malvales View MSA
124347358 5266 SBM View MSA
124245447 5268 Malvidae View MSA
124074008 5270 Rosid View MSA
123740864 5271 Pentapetalae View MSA
122789920 5272 Eudicot View MSA
122041687 5273 Angiosperm View MSA
121347429 5274 Embryophyte View MSA
123424301 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.564       High
cufflinks 19.642        
cufflinks 16.585       Low
cufflinks 21.686        
cufflinks 21.684        
cufflinks 17.648        

0 Strain