Gene : AT5G04800 A. thaliana TAIR10
Defline:  (1 of 4) K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Genomic Order:  402
Name:  ? AT5G04800 Secondary Identifier:  ? PAC:19672586
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04800 0.5kb upstream 0.5kb upstream 1883 true Chr5: 1387983-1389865 Arabidopsis thaliana
AT5G04800 0.5kb upstream 0.5kb upstream 500 false Chr5: 1387983-1388482 Arabidopsis thaliana
AT5G04800 0.5kb downstream 0.5kb downstream 1883 true Chr5: 1388483-1390365 Arabidopsis thaliana
AT5G04800 0.5kb downstream 0.5kb downstream 500 false Chr5: 1389866-1390365 Arabidopsis thaliana
AT5G04800 1.0kb upstream 1.0kb upstream 2383 true Chr5: 1387483-1389865 Arabidopsis thaliana
AT5G04800 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1387483-1388482 Arabidopsis thaliana
AT5G04800 1.0kb downstream 1.0kb downstream 2383 true Chr5: 1388483-1390865 Arabidopsis thaliana
AT5G04800 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1389866-1390865 Arabidopsis thaliana
AT5G04800 2.0kb upstream 2.0kb upstream 3383 true Chr5: 1386483-1389865 Arabidopsis thaliana
AT5G04800 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1386483-1388482 Arabidopsis thaliana
AT5G04800 2.0kb downstream 2.0kb downstream 3383 true Chr5: 1388483-1391865 Arabidopsis thaliana
AT5G04800 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1389866-1391865 Arabidopsis thaliana
AT5G04800 5.0kb upstream 5.0kb upstream 6383 true Chr5: 1383483-1389865 Arabidopsis thaliana
AT5G04800 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1383483-1388482 Arabidopsis thaliana
AT5G04800 5.0kb downstream 5.0kb downstream 6383 true Chr5: 1388483-1394865 Arabidopsis thaliana
AT5G04800 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1389866-1394865 Arabidopsis thaliana
AT5G04800 10.0kb upstream 10.0kb upstream 11383 true Chr5: 1378483-1389865 Arabidopsis thaliana
AT5G04800 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1378483-1388482 Arabidopsis thaliana
AT5G04800 10.0kb downstream 10.0kb downstream 11383 true Chr5: 1388483-1399865 Arabidopsis thaliana
AT5G04800 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1389866-1399865 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361902 5261 Brassicaceae View MSA
123836643 5264 Brassicales-Malvales View MSA
124351310 5266 SBM View MSA
124251195 5268 Malvidae View MSA
124071024 5270 Rosid View MSA
123751430 5271 Pentapetalae View MSA
122795283 5272 Eudicot View MSA
122050238 5273 Angiosperm View MSA
121349332 5274 Embryophyte View MSA
123426217 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.719        
cufflinks 15.594        
cufflinks 11.043        
cufflinks 17.971        
cufflinks 8.942       Low
cufflinks 20.214       High

0 Strain