Gene : RTM2 A. thaliana TAIR10
Primary Identifier:  ? AT5G04890 Defline:  (1 of 1) PTHR11527:SF140 - PROTEIN RESTRICTED TEV MOVEMENT 2
Genomic Order:  412 Name:  ? AT5G04890
Secondary Identifier:  ? PAC:19668999
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04890 0.5kb upstream 0.5kb upstream 1782 true Chr5: 1426673-1428454 Arabidopsis thaliana
AT5G04890 0.5kb upstream 0.5kb upstream 500 false Chr5: 1426673-1427172 Arabidopsis thaliana
AT5G04890 0.5kb downstream 0.5kb downstream 1782 true Chr5: 1427173-1428954 Arabidopsis thaliana
AT5G04890 0.5kb downstream 0.5kb downstream 500 false Chr5: 1428455-1428954 Arabidopsis thaliana
AT5G04890 1.0kb upstream 1.0kb upstream 2282 true Chr5: 1426173-1428454 Arabidopsis thaliana
AT5G04890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1426173-1427172 Arabidopsis thaliana
AT5G04890 1.0kb downstream 1.0kb downstream 2282 true Chr5: 1427173-1429454 Arabidopsis thaliana
AT5G04890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1428455-1429454 Arabidopsis thaliana
AT5G04890 2.0kb upstream 2.0kb upstream 3282 true Chr5: 1425173-1428454 Arabidopsis thaliana
AT5G04890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1425173-1427172 Arabidopsis thaliana
AT5G04890 2.0kb downstream 2.0kb downstream 3282 true Chr5: 1427173-1430454 Arabidopsis thaliana
AT5G04890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1428455-1430454 Arabidopsis thaliana
AT5G04890 5.0kb upstream 5.0kb upstream 6282 true Chr5: 1422173-1428454 Arabidopsis thaliana
AT5G04890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1422173-1427172 Arabidopsis thaliana
AT5G04890 5.0kb downstream 5.0kb downstream 6282 true Chr5: 1427173-1433454 Arabidopsis thaliana
AT5G04890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1428455-1433454 Arabidopsis thaliana
AT5G04890 10.0kb upstream 10.0kb upstream 11282 true Chr5: 1417173-1428454 Arabidopsis thaliana
AT5G04890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1417173-1427172 Arabidopsis thaliana
AT5G04890 10.0kb downstream 10.0kb downstream 11282 true Chr5: 1427173-1438454 Arabidopsis thaliana
AT5G04890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1428455-1438454 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368483 5261 Brassicaceae View MSA
123840868 5264 Brassicales-Malvales View MSA
124344040 5266 SBM View MSA
124238801 5268 Malvidae View MSA
124074314 5270 Rosid View MSA
123751884 5271 Pentapetalae View MSA
122795343 5272 Eudicot View MSA
122051065 5273 Angiosperm View MSA
121312276 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.907        
cufflinks 17.442        
cufflinks 2.309        
cufflinks 15.016        
cufflinks 1.53       Low
cufflinks 17.427        

0 Strain