Gene : AT5G04690 A. thaliana TAIR10
Defline:  (1 of 3) PTHR24177//PTHR24177:SF32 - FAMILY NOT NAMED // ANKYRIN REPEAT FAMILY PROTEIN Genomic Order:  391
Name:  ? AT5G04690 Secondary Identifier:  ? PAC:19670677
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04690 0.5kb upstream 0.5kb upstream 3383 true Chr5: 1349643-1353025 Arabidopsis thaliana
AT5G04690 0.5kb upstream 0.5kb upstream 500 false Chr5: 1352526-1353025 Arabidopsis thaliana
AT5G04690 0.5kb downstream 0.5kb downstream 3383 true Chr5: 1349143-1352525 Arabidopsis thaliana
AT5G04690 0.5kb downstream 0.5kb downstream 500 false Chr5: 1349143-1349642 Arabidopsis thaliana
AT5G04690 1.0kb upstream 1.0kb upstream 3883 true Chr5: 1349643-1353525 Arabidopsis thaliana
AT5G04690 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1352526-1353525 Arabidopsis thaliana
AT5G04690 1.0kb downstream 1.0kb downstream 3883 true Chr5: 1348643-1352525 Arabidopsis thaliana
AT5G04690 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1348643-1349642 Arabidopsis thaliana
AT5G04690 2.0kb upstream 2.0kb upstream 4883 true Chr5: 1349643-1354525 Arabidopsis thaliana
AT5G04690 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1352526-1354525 Arabidopsis thaliana
AT5G04690 2.0kb downstream 2.0kb downstream 4883 true Chr5: 1347643-1352525 Arabidopsis thaliana
AT5G04690 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1347643-1349642 Arabidopsis thaliana
AT5G04690 5.0kb upstream 5.0kb upstream 7883 true Chr5: 1349643-1357525 Arabidopsis thaliana
AT5G04690 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1352526-1357525 Arabidopsis thaliana
AT5G04690 5.0kb downstream 5.0kb downstream 7883 true Chr5: 1344643-1352525 Arabidopsis thaliana
AT5G04690 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1344643-1349642 Arabidopsis thaliana
AT5G04690 10.0kb upstream 10.0kb upstream 12883 true Chr5: 1349643-1362525 Arabidopsis thaliana
AT5G04690 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1352526-1362525 Arabidopsis thaliana
AT5G04690 10.0kb downstream 10.0kb downstream 12883 true Chr5: 1339643-1352525 Arabidopsis thaliana
AT5G04690 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1339643-1349642 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331313 5261 Brassicaceae Singleton cluster - no MSA
123841849 5264 Brassicales-Malvales View MSA
124323070 5266 SBM View MSA
124255225 5268 Malvidae View MSA
124074259 5270 Rosid View MSA
123753624 5271 Pentapetalae View MSA
122797775 5272 Eudicot View MSA
122051097 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351705 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.474        
cufflinks 1.314       High
cufflinks 0.34       Low
cufflinks 1.032        
cufflinks 0.343       Low
cufflinks 1.217        

0 Strain