Gene : SIR A. thaliana TAIR10
Primary Identifier:  ? AT5G04590 Defline:  (1 of 1) 1.8.7.1 - Assimilatory sulfite reductase (ferredoxin) / Sulfite reductase (ferredoxin)
Genomic Order:  382 Name:  ? AT5G04590
Secondary Identifier:  ? PAC:19665499
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana SULFMETII-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04590 0.5kb upstream 0.5kb upstream 3671 true Chr5: 1318856-1322526 Arabidopsis thaliana
AT5G04590 0.5kb upstream 0.5kb upstream 500 false Chr5: 1318856-1319355 Arabidopsis thaliana
AT5G04590 0.5kb downstream 0.5kb downstream 3671 true Chr5: 1319356-1323026 Arabidopsis thaliana
AT5G04590 0.5kb downstream 0.5kb downstream 500 false Chr5: 1322527-1323026 Arabidopsis thaliana
AT5G04590 1.0kb upstream 1.0kb upstream 4171 true Chr5: 1318356-1322526 Arabidopsis thaliana
AT5G04590 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1318356-1319355 Arabidopsis thaliana
AT5G04590 1.0kb downstream 1.0kb downstream 4171 true Chr5: 1319356-1323526 Arabidopsis thaliana
AT5G04590 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1322527-1323526 Arabidopsis thaliana
AT5G04590 2.0kb upstream 2.0kb upstream 5171 true Chr5: 1317356-1322526 Arabidopsis thaliana
AT5G04590 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1317356-1319355 Arabidopsis thaliana
AT5G04590 2.0kb downstream 2.0kb downstream 5171 true Chr5: 1319356-1324526 Arabidopsis thaliana
AT5G04590 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1322527-1324526 Arabidopsis thaliana
AT5G04590 5.0kb upstream 5.0kb upstream 8171 true Chr5: 1314356-1322526 Arabidopsis thaliana
AT5G04590 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1314356-1319355 Arabidopsis thaliana
AT5G04590 5.0kb downstream 5.0kb downstream 8171 true Chr5: 1319356-1327526 Arabidopsis thaliana
AT5G04590 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1322527-1327526 Arabidopsis thaliana
AT5G04590 10.0kb upstream 10.0kb upstream 13171 true Chr5: 1309356-1322526 Arabidopsis thaliana
AT5G04590 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1309356-1319355 Arabidopsis thaliana
AT5G04590 10.0kb downstream 10.0kb downstream 13171 true Chr5: 1319356-1332526 Arabidopsis thaliana
AT5G04590 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1322527-1332526 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376126 5261 Brassicaceae View MSA
123832521 5264 Brassicales-Malvales View MSA
124346545 5266 SBM View MSA
124253908 5268 Malvidae View MSA
124060544 5270 Rosid View MSA
123736822 5271 Pentapetalae View MSA
122788210 5272 Eudicot View MSA
122046794 5273 Angiosperm View MSA
121347601 5274 Embryophyte View MSA
123426782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 109.638     High  
cufflinks 69.549     High Low
cufflinks 95.943     High  
cufflinks 73.536     High Low
cufflinks 90.04     High  
cufflinks 114.638     High High

0 Strain