Gene : AT5G04460 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10044//PTHR10044:SF127 - INHIBITOR OF APOPTOSIS // RING/U-BOX DOMAIN-CONTAINING PROTEIN Genomic Order:  371
Name:  ? AT5G04460 Secondary Identifier:  ? PAC:19667116
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04460 0.5kb upstream 0.5kb upstream 4995 true Chr5: 1259031-1264025 Arabidopsis thaliana
AT5G04460 0.5kb upstream 0.5kb upstream 500 false Chr5: 1259031-1259530 Arabidopsis thaliana
AT5G04460 0.5kb downstream 0.5kb downstream 4995 true Chr5: 1259531-1264525 Arabidopsis thaliana
AT5G04460 0.5kb downstream 0.5kb downstream 500 false Chr5: 1264026-1264525 Arabidopsis thaliana
AT5G04460 1.0kb upstream 1.0kb upstream 5495 true Chr5: 1258531-1264025 Arabidopsis thaliana
AT5G04460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1258531-1259530 Arabidopsis thaliana
AT5G04460 1.0kb downstream 1.0kb downstream 5495 true Chr5: 1259531-1265025 Arabidopsis thaliana
AT5G04460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1264026-1265025 Arabidopsis thaliana
AT5G04460 2.0kb upstream 2.0kb upstream 6495 true Chr5: 1257531-1264025 Arabidopsis thaliana
AT5G04460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1257531-1259530 Arabidopsis thaliana
AT5G04460 2.0kb downstream 2.0kb downstream 6495 true Chr5: 1259531-1266025 Arabidopsis thaliana
AT5G04460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1264026-1266025 Arabidopsis thaliana
AT5G04460 5.0kb upstream 5.0kb upstream 9495 true Chr5: 1254531-1264025 Arabidopsis thaliana
AT5G04460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1254531-1259530 Arabidopsis thaliana
AT5G04460 5.0kb downstream 5.0kb downstream 9495 true Chr5: 1259531-1269025 Arabidopsis thaliana
AT5G04460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1264026-1269025 Arabidopsis thaliana
AT5G04460 10.0kb upstream 10.0kb upstream 14495 true Chr5: 1249531-1264025 Arabidopsis thaliana
AT5G04460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1249531-1259530 Arabidopsis thaliana
AT5G04460 10.0kb downstream 10.0kb downstream 14495 true Chr5: 1259531-1274025 Arabidopsis thaliana
AT5G04460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1264026-1274025 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367196 5261 Brassicaceae View MSA
123838809 5264 Brassicales-Malvales View MSA
124338275 5266 SBM View MSA
124245236 5268 Malvidae View MSA
124065463 5270 Rosid View MSA
123737422 5271 Pentapetalae View MSA
122787073 5272 Eudicot View MSA
122041881 5273 Angiosperm View MSA
121350906 5274 Embryophyte View MSA
123381933 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.13        
cufflinks 3.646        
cufflinks 1.734       Low
cufflinks 4.17       High
cufflinks 1.973        
cufflinks 3.551        

0 Strain