Gene : AT5G04170 A. thaliana TAIR10
Defline:  (1 of 4) PTHR10183 - CALPAIN Genomic Order:  340
Name:  ? AT5G04170 Secondary Identifier:  ? PAC:19672043
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04170 0.5kb upstream 0.5kb upstream 2851 true Chr5: 1144931-1147781 Arabidopsis thaliana
AT5G04170 0.5kb upstream 0.5kb upstream 500 false Chr5: 1144931-1145430 Arabidopsis thaliana
AT5G04170 0.5kb downstream 0.5kb downstream 2851 true Chr5: 1145431-1148281 Arabidopsis thaliana
AT5G04170 0.5kb downstream 0.5kb downstream 500 false Chr5: 1147782-1148281 Arabidopsis thaliana
AT5G04170 1.0kb upstream 1.0kb upstream 3351 true Chr5: 1144431-1147781 Arabidopsis thaliana
AT5G04170 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1144431-1145430 Arabidopsis thaliana
AT5G04170 1.0kb downstream 1.0kb downstream 3351 true Chr5: 1145431-1148781 Arabidopsis thaliana
AT5G04170 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1147782-1148781 Arabidopsis thaliana
AT5G04170 2.0kb upstream 2.0kb upstream 4351 true Chr5: 1143431-1147781 Arabidopsis thaliana
AT5G04170 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1143431-1145430 Arabidopsis thaliana
AT5G04170 2.0kb downstream 2.0kb downstream 4351 true Chr5: 1145431-1149781 Arabidopsis thaliana
AT5G04170 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1147782-1149781 Arabidopsis thaliana
AT5G04170 5.0kb upstream 5.0kb upstream 7351 true Chr5: 1140431-1147781 Arabidopsis thaliana
AT5G04170 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1140431-1145430 Arabidopsis thaliana
AT5G04170 5.0kb downstream 5.0kb downstream 7351 true Chr5: 1145431-1152781 Arabidopsis thaliana
AT5G04170 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1147782-1152781 Arabidopsis thaliana
AT5G04170 10.0kb upstream 10.0kb upstream 12351 true Chr5: 1135431-1147781 Arabidopsis thaliana
AT5G04170 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1135431-1145430 Arabidopsis thaliana
AT5G04170 10.0kb downstream 10.0kb downstream 12351 true Chr5: 1145431-1157781 Arabidopsis thaliana
AT5G04170 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1147782-1157781 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369175 5261 Brassicaceae View MSA
123836587 5264 Brassicales-Malvales View MSA
124338746 5266 SBM View MSA
124239848 5268 Malvidae View MSA
124064338 5270 Rosid View MSA
123744145 5271 Pentapetalae View MSA
122790435 5272 Eudicot View MSA
122044402 5273 Angiosperm View MSA
121345695 5274 Embryophyte View MSA
123427497 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.728        
cufflinks 27.404        
cufflinks 21.682       Low
cufflinks 26.637        
cufflinks 26.185     High  
cufflinks 30.357     High High

0 Strain