Gene : SYTC A. thaliana TAIR10
Primary Identifier:  ? AT5G04220 Defline:  (1 of 1) PTHR10774:SF62 - SYNAPTOTAGMIN-3
Genomic Order:  345 Name:  ? AT5G04220
Secondary Identifier:  ? PAC:19671601
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04220 0.5kb upstream 0.5kb upstream 3513 true Chr5: 1155865-1159377 Arabidopsis thaliana
AT5G04220 0.5kb upstream 0.5kb upstream 500 false Chr5: 1158878-1159377 Arabidopsis thaliana
AT5G04220 0.5kb downstream 0.5kb downstream 3513 true Chr5: 1155365-1158877 Arabidopsis thaliana
AT5G04220 0.5kb downstream 0.5kb downstream 500 false Chr5: 1155365-1155864 Arabidopsis thaliana
AT5G04220 1.0kb upstream 1.0kb upstream 4013 true Chr5: 1155865-1159877 Arabidopsis thaliana
AT5G04220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1158878-1159877 Arabidopsis thaliana
AT5G04220 1.0kb downstream 1.0kb downstream 4013 true Chr5: 1154865-1158877 Arabidopsis thaliana
AT5G04220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1154865-1155864 Arabidopsis thaliana
AT5G04220 2.0kb upstream 2.0kb upstream 5013 true Chr5: 1155865-1160877 Arabidopsis thaliana
AT5G04220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1158878-1160877 Arabidopsis thaliana
AT5G04220 2.0kb downstream 2.0kb downstream 5013 true Chr5: 1153865-1158877 Arabidopsis thaliana
AT5G04220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1153865-1155864 Arabidopsis thaliana
AT5G04220 5.0kb upstream 5.0kb upstream 8013 true Chr5: 1155865-1163877 Arabidopsis thaliana
AT5G04220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1158878-1163877 Arabidopsis thaliana
AT5G04220 5.0kb downstream 5.0kb downstream 8013 true Chr5: 1150865-1158877 Arabidopsis thaliana
AT5G04220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1150865-1155864 Arabidopsis thaliana
AT5G04220 10.0kb upstream 10.0kb upstream 13013 true Chr5: 1155865-1168877 Arabidopsis thaliana
AT5G04220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1158878-1168877 Arabidopsis thaliana
AT5G04220 10.0kb downstream 10.0kb downstream 13013 true Chr5: 1145865-1158877 Arabidopsis thaliana
AT5G04220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1145865-1155864 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362815 5261 Brassicaceae View MSA
123832033 5264 Brassicales-Malvales View MSA
124336804 5266 SBM View MSA
124241802 5268 Malvidae View MSA
124064081 5270 Rosid View MSA
123738784 5271 Pentapetalae View MSA
122793705 5272 Eudicot View MSA
122046741 5273 Angiosperm View MSA
123429031 5275 Viridiplantae View MSA
121310651 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.574        
cufflinks 0.908       Low
cufflinks 3.986        
cufflinks 1.205        
cufflinks 4.786       High
cufflinks 1.203        

0 Strain