Gene : AT5G04250 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12419//PTHR12419:SF19 - OTU DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  349
Name:  ? AT5G04250 Secondary Identifier:  ? PAC:19670974
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04250 0.5kb upstream 0.5kb upstream 3196 true Chr5: 1175505-1178700 Arabidopsis thaliana
AT5G04250 0.5kb upstream 0.5kb upstream 500 false Chr5: 1175505-1176004 Arabidopsis thaliana
AT5G04250 0.5kb downstream 0.5kb downstream 3196 true Chr5: 1176005-1179200 Arabidopsis thaliana
AT5G04250 0.5kb downstream 0.5kb downstream 500 false Chr5: 1178701-1179200 Arabidopsis thaliana
AT5G04250 1.0kb upstream 1.0kb upstream 3696 true Chr5: 1175005-1178700 Arabidopsis thaliana
AT5G04250 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1175005-1176004 Arabidopsis thaliana
AT5G04250 1.0kb downstream 1.0kb downstream 3696 true Chr5: 1176005-1179700 Arabidopsis thaliana
AT5G04250 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1178701-1179700 Arabidopsis thaliana
AT5G04250 2.0kb upstream 2.0kb upstream 4696 true Chr5: 1174005-1178700 Arabidopsis thaliana
AT5G04250 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1174005-1176004 Arabidopsis thaliana
AT5G04250 2.0kb downstream 2.0kb downstream 4696 true Chr5: 1176005-1180700 Arabidopsis thaliana
AT5G04250 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1178701-1180700 Arabidopsis thaliana
AT5G04250 5.0kb upstream 5.0kb upstream 7696 true Chr5: 1171005-1178700 Arabidopsis thaliana
AT5G04250 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1171005-1176004 Arabidopsis thaliana
AT5G04250 5.0kb downstream 5.0kb downstream 7696 true Chr5: 1176005-1183700 Arabidopsis thaliana
AT5G04250 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1178701-1183700 Arabidopsis thaliana
AT5G04250 10.0kb upstream 10.0kb upstream 12696 true Chr5: 1166005-1178700 Arabidopsis thaliana
AT5G04250 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1166005-1176004 Arabidopsis thaliana
AT5G04250 10.0kb downstream 10.0kb downstream 12696 true Chr5: 1176005-1188700 Arabidopsis thaliana
AT5G04250 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1178701-1188700 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371852 5261 Brassicaceae View MSA
123828555 5264 Brassicales-Malvales View MSA
124339581 5266 SBM View MSA
124251680 5268 Malvidae View MSA
124066333 5270 Rosid View MSA
123743617 5271 Pentapetalae View MSA
122787682 5272 Eudicot View MSA
122042328 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.915       Low
cufflinks 2.253        
cufflinks 2.202        
cufflinks 3.796       High
cufflinks 3.104        
cufflinks 2.177        

0 Strain