Gene : MLS A. thaliana TAIR10
Primary Identifier:  ? AT5G03860 Defline:  (1 of 1) 2.3.3.9 - Malate synthase / Malic-condensing enzyme
Genomic Order:  306 Name:  ? AT5G03860
Secondary Identifier:  ? PAC:19665381
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G03860 0.5kb upstream 0.5kb upstream 3371 true Chr5: 1032103-1035473 Arabidopsis thaliana
AT5G03860 0.5kb upstream 0.5kb upstream 500 false Chr5: 1034974-1035473 Arabidopsis thaliana
AT5G03860 0.5kb downstream 0.5kb downstream 3371 true Chr5: 1031603-1034973 Arabidopsis thaliana
AT5G03860 0.5kb downstream 0.5kb downstream 500 false Chr5: 1031603-1032102 Arabidopsis thaliana
AT5G03860 1.0kb upstream 1.0kb upstream 3871 true Chr5: 1032103-1035973 Arabidopsis thaliana
AT5G03860 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1034974-1035973 Arabidopsis thaliana
AT5G03860 1.0kb downstream 1.0kb downstream 3871 true Chr5: 1031103-1034973 Arabidopsis thaliana
AT5G03860 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1031103-1032102 Arabidopsis thaliana
AT5G03860 2.0kb upstream 2.0kb upstream 4871 true Chr5: 1032103-1036973 Arabidopsis thaliana
AT5G03860 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1034974-1036973 Arabidopsis thaliana
AT5G03860 2.0kb downstream 2.0kb downstream 4871 true Chr5: 1030103-1034973 Arabidopsis thaliana
AT5G03860 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1030103-1032102 Arabidopsis thaliana
AT5G03860 5.0kb upstream 5.0kb upstream 7871 true Chr5: 1032103-1039973 Arabidopsis thaliana
AT5G03860 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1034974-1039973 Arabidopsis thaliana
AT5G03860 5.0kb downstream 5.0kb downstream 7871 true Chr5: 1027103-1034973 Arabidopsis thaliana
AT5G03860 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1027103-1032102 Arabidopsis thaliana
AT5G03860 10.0kb upstream 10.0kb upstream 12871 true Chr5: 1032103-1044973 Arabidopsis thaliana
AT5G03860 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1034974-1044973 Arabidopsis thaliana
AT5G03860 10.0kb downstream 10.0kb downstream 12871 true Chr5: 1022103-1034973 Arabidopsis thaliana
AT5G03860 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1022103-1032102 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375054 5261 Brassicaceae View MSA
123830660 5264 Brassicales-Malvales View MSA
124341065 5266 SBM View MSA
124239458 5268 Malvidae View MSA
124066130 5270 Rosid View MSA
123738008 5271 Pentapetalae View MSA
122788677 5272 Eudicot View MSA
122048246 5273 Angiosperm View MSA
121346455 5274 Embryophyte View MSA
123425007 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.003     Low Low
cufflinks 0.25     Low  
cufflinks 0.005     Low  
cufflinks 0.488       High
cufflinks 0.018     Low  
cufflinks 0.134     Low  

0 Strain