Gene : AT5G03890 A. thaliana TAIR10
Defline:  (1 of 3) PTHR33148:SF2 - EMB Genomic Order:  309
Name:  ? AT5G03890 Secondary Identifier:  ? PAC:19668798
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G03890 0.5kb upstream 0.5kb upstream 1040 true Chr5: 1046650-1047689 Arabidopsis thaliana
AT5G03890 0.5kb upstream 0.5kb upstream 500 false Chr5: 1046650-1047149 Arabidopsis thaliana
AT5G03890 0.5kb downstream 0.5kb downstream 1040 true Chr5: 1047150-1048189 Arabidopsis thaliana
AT5G03890 0.5kb downstream 0.5kb downstream 500 false Chr5: 1047690-1048189 Arabidopsis thaliana
AT5G03890 1.0kb upstream 1.0kb upstream 1540 true Chr5: 1046150-1047689 Arabidopsis thaliana
AT5G03890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1046150-1047149 Arabidopsis thaliana
AT5G03890 1.0kb downstream 1.0kb downstream 1540 true Chr5: 1047150-1048689 Arabidopsis thaliana
AT5G03890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1047690-1048689 Arabidopsis thaliana
AT5G03890 2.0kb upstream 2.0kb upstream 2540 true Chr5: 1045150-1047689 Arabidopsis thaliana
AT5G03890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1045150-1047149 Arabidopsis thaliana
AT5G03890 2.0kb downstream 2.0kb downstream 2540 true Chr5: 1047150-1049689 Arabidopsis thaliana
AT5G03890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1047690-1049689 Arabidopsis thaliana
AT5G03890 5.0kb upstream 5.0kb upstream 5540 true Chr5: 1042150-1047689 Arabidopsis thaliana
AT5G03890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1042150-1047149 Arabidopsis thaliana
AT5G03890 5.0kb downstream 5.0kb downstream 5540 true Chr5: 1047150-1052689 Arabidopsis thaliana
AT5G03890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1047690-1052689 Arabidopsis thaliana
AT5G03890 10.0kb upstream 10.0kb upstream 10540 true Chr5: 1037150-1047689 Arabidopsis thaliana
AT5G03890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1037150-1047149 Arabidopsis thaliana
AT5G03890 10.0kb downstream 10.0kb downstream 10540 true Chr5: 1047150-1057689 Arabidopsis thaliana
AT5G03890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1047690-1057689 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377870 5261 Brassicaceae View MSA
123838897 5264 Brassicales-Malvales View MSA
124350528 5266 SBM View MSA
124239874 5268 Malvidae View MSA
124067706 5270 Rosid View MSA
123751339 5271 Pentapetalae View MSA
122790618 5272 Eudicot View MSA
122049555 5273 Angiosperm View MSA
121311472 5274 Embryophyte View MSA
123348766 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.921        
cufflinks 3.841        
cufflinks 0.559       Low
cufflinks 5.139       High
cufflinks 0.682        
cufflinks 4.248        

0 Strain