Gene : AT5G06980 A. thaliana TAIR10
Defline:  (1 of 2) PTHR33334:SF2 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MQC3 Genomic Order:  632
Name:  ? AT5G06980 Secondary Identifier:  ? PAC:19667441
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06980 0.5kb upstream 0.5kb upstream 2424 true Chr5: 2166968-2169391 Arabidopsis thaliana
AT5G06980 0.5kb upstream 0.5kb upstream 500 false Chr5: 2166968-2167467 Arabidopsis thaliana
AT5G06980 0.5kb downstream 0.5kb downstream 2424 true Chr5: 2167468-2169891 Arabidopsis thaliana
AT5G06980 0.5kb downstream 0.5kb downstream 500 false Chr5: 2169392-2169891 Arabidopsis thaliana
AT5G06980 1.0kb upstream 1.0kb upstream 2924 true Chr5: 2166468-2169391 Arabidopsis thaliana
AT5G06980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2166468-2167467 Arabidopsis thaliana
AT5G06980 1.0kb downstream 1.0kb downstream 2924 true Chr5: 2167468-2170391 Arabidopsis thaliana
AT5G06980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2169392-2170391 Arabidopsis thaliana
AT5G06980 2.0kb upstream 2.0kb upstream 3924 true Chr5: 2165468-2169391 Arabidopsis thaliana
AT5G06980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2165468-2167467 Arabidopsis thaliana
AT5G06980 2.0kb downstream 2.0kb downstream 3924 true Chr5: 2167468-2171391 Arabidopsis thaliana
AT5G06980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2169392-2171391 Arabidopsis thaliana
AT5G06980 5.0kb upstream 5.0kb upstream 6924 true Chr5: 2162468-2169391 Arabidopsis thaliana
AT5G06980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2162468-2167467 Arabidopsis thaliana
AT5G06980 5.0kb downstream 5.0kb downstream 6924 true Chr5: 2167468-2174391 Arabidopsis thaliana
AT5G06980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2169392-2174391 Arabidopsis thaliana
AT5G06980 10.0kb upstream 10.0kb upstream 11924 true Chr5: 2157468-2169391 Arabidopsis thaliana
AT5G06980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2157468-2167467 Arabidopsis thaliana
AT5G06980 10.0kb downstream 10.0kb downstream 11924 true Chr5: 2167468-2179391 Arabidopsis thaliana
AT5G06980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2169392-2179391 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365815 5261 Brassicaceae View MSA
123840813 5264 Brassicales-Malvales View MSA
124322787 5266 SBM View MSA
124248764 5268 Malvidae View MSA
124070153 5270 Rosid View MSA
123737898 5271 Pentapetalae View MSA
122796234 5272 Eudicot View MSA
122050625 5273 Angiosperm View MSA
121312034 5274 Embryophyte View MSA
123349247 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.313       Low
cufflinks 1.711        
cufflinks 1.235        
cufflinks 3.319       High
cufflinks 2.902        
cufflinks 0.89        

0 Strain