Gene : UBP12 A. thaliana TAIR10
Primary Identifier:  ? AT5G06600 Defline:  (1 of 2) K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15)
Genomic Order:  593 Name:  ? AT5G06600
Secondary Identifier:  ? PAC:19672835
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06600 0.5kb upstream 0.5kb upstream 9339 true Chr5: 2019107-2028445 Arabidopsis thaliana
AT5G06600 0.5kb upstream 0.5kb upstream 500 false Chr5: 2027946-2028445 Arabidopsis thaliana
AT5G06600 0.5kb downstream 0.5kb downstream 9339 true Chr5: 2018607-2027945 Arabidopsis thaliana
AT5G06600 0.5kb downstream 0.5kb downstream 500 false Chr5: 2018607-2019106 Arabidopsis thaliana
AT5G06600 1.0kb upstream 1.0kb upstream 9839 true Chr5: 2019107-2028945 Arabidopsis thaliana
AT5G06600 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2027946-2028945 Arabidopsis thaliana
AT5G06600 1.0kb downstream 1.0kb downstream 9839 true Chr5: 2018107-2027945 Arabidopsis thaliana
AT5G06600 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2018107-2019106 Arabidopsis thaliana
AT5G06600 2.0kb upstream 2.0kb upstream 10839 true Chr5: 2019107-2029945 Arabidopsis thaliana
AT5G06600 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2027946-2029945 Arabidopsis thaliana
AT5G06600 2.0kb downstream 2.0kb downstream 10839 true Chr5: 2017107-2027945 Arabidopsis thaliana
AT5G06600 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2017107-2019106 Arabidopsis thaliana
AT5G06600 5.0kb upstream 5.0kb upstream 13839 true Chr5: 2019107-2032945 Arabidopsis thaliana
AT5G06600 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2027946-2032945 Arabidopsis thaliana
AT5G06600 5.0kb downstream 5.0kb downstream 13839 true Chr5: 2014107-2027945 Arabidopsis thaliana
AT5G06600 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2014107-2019106 Arabidopsis thaliana
AT5G06600 10.0kb upstream 10.0kb upstream 18839 true Chr5: 2019107-2037945 Arabidopsis thaliana
AT5G06600 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2027946-2037945 Arabidopsis thaliana
AT5G06600 10.0kb downstream 10.0kb downstream 18839 true Chr5: 2009107-2027945 Arabidopsis thaliana
AT5G06600 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2009107-2019106 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370674 5261 Brassicaceae View MSA
123841260 5264 Brassicales-Malvales View MSA
124343034 5266 SBM View MSA
124243207 5268 Malvidae View MSA
124072091 5270 Rosid View MSA
123746914 5271 Pentapetalae View MSA
122788764 5272 Eudicot View MSA
122042201 5273 Angiosperm View MSA
121346231 5274 Embryophyte View MSA
123427549 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.162       High
cufflinks 7.048        
cufflinks 6.214       Low
cufflinks 7.309        
cufflinks 6.621        
cufflinks 8.103       High

0 Strain