Gene : SDG38 A. thaliana TAIR10
Primary Identifier:  ? AT5G06620 Defline:  (1 of 1) PTHR12197//PTHR12197:SF145 - SET AND MYND DOMAIN CONTAINING // SET DOMAIN-CONTAINING PROTEIN
Genomic Order:  595 Name:  ? AT5G06620
Secondary Identifier:  ? PAC:19668112
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06620 0.5kb upstream 0.5kb upstream 2884 true Chr5: 2033260-2036143 Arabidopsis thaliana
AT5G06620 0.5kb upstream 0.5kb upstream 500 false Chr5: 2033260-2033759 Arabidopsis thaliana
AT5G06620 0.5kb downstream 0.5kb downstream 2884 true Chr5: 2033760-2036643 Arabidopsis thaliana
AT5G06620 0.5kb downstream 0.5kb downstream 500 false Chr5: 2036144-2036643 Arabidopsis thaliana
AT5G06620 1.0kb upstream 1.0kb upstream 3384 true Chr5: 2032760-2036143 Arabidopsis thaliana
AT5G06620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2032760-2033759 Arabidopsis thaliana
AT5G06620 1.0kb downstream 1.0kb downstream 3384 true Chr5: 2033760-2037143 Arabidopsis thaliana
AT5G06620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2036144-2037143 Arabidopsis thaliana
AT5G06620 2.0kb upstream 2.0kb upstream 4384 true Chr5: 2031760-2036143 Arabidopsis thaliana
AT5G06620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2031760-2033759 Arabidopsis thaliana
AT5G06620 2.0kb downstream 2.0kb downstream 4384 true Chr5: 2033760-2038143 Arabidopsis thaliana
AT5G06620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2036144-2038143 Arabidopsis thaliana
AT5G06620 5.0kb upstream 5.0kb upstream 7384 true Chr5: 2028760-2036143 Arabidopsis thaliana
AT5G06620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2028760-2033759 Arabidopsis thaliana
AT5G06620 5.0kb downstream 5.0kb downstream 7384 true Chr5: 2033760-2041143 Arabidopsis thaliana
AT5G06620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2036144-2041143 Arabidopsis thaliana
AT5G06620 10.0kb upstream 10.0kb upstream 12384 true Chr5: 2023760-2036143 Arabidopsis thaliana
AT5G06620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2023760-2033759 Arabidopsis thaliana
AT5G06620 10.0kb downstream 10.0kb downstream 12384 true Chr5: 2033760-2046143 Arabidopsis thaliana
AT5G06620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2036144-2046143 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365396 5261 Brassicaceae View MSA
123833672 5264 Brassicales-Malvales View MSA
124321887 5266 SBM View MSA
124244301 5268 Malvidae View MSA
124037151 5270 Rosid View MSA
123740092 5271 Pentapetalae View MSA
122789210 5272 Eudicot View MSA
122047445 5273 Angiosperm View MSA
121345734 5274 Embryophyte View MSA
123425197 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.753        
cufflinks 2.7       High
cufflinks 1.742        
cufflinks 2.727       High
cufflinks 1.572       Low
cufflinks 2.209        

0 Strain