Gene : AT5G06220 A. thaliana TAIR10
Defline:  (1 of 2) PTHR14009//PTHR14009:SF9 - LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN // LETM1-LIKE PROTEIN Genomic Order:  554
Name:  ? AT5G06220 Secondary Identifier:  ? PAC:19667335
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06220 0.5kb upstream 0.5kb upstream 6207 true Chr5: 1879437-1885643 Arabidopsis thaliana
AT5G06220 0.5kb upstream 0.5kb upstream 500 false Chr5: 1879437-1879936 Arabidopsis thaliana
AT5G06220 0.5kb downstream 0.5kb downstream 6207 true Chr5: 1879937-1886143 Arabidopsis thaliana
AT5G06220 0.5kb downstream 0.5kb downstream 500 false Chr5: 1885644-1886143 Arabidopsis thaliana
AT5G06220 1.0kb upstream 1.0kb upstream 6707 true Chr5: 1878937-1885643 Arabidopsis thaliana
AT5G06220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1878937-1879936 Arabidopsis thaliana
AT5G06220 1.0kb downstream 1.0kb downstream 6707 true Chr5: 1879937-1886643 Arabidopsis thaliana
AT5G06220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1885644-1886643 Arabidopsis thaliana
AT5G06220 2.0kb upstream 2.0kb upstream 7707 true Chr5: 1877937-1885643 Arabidopsis thaliana
AT5G06220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1877937-1879936 Arabidopsis thaliana
AT5G06220 2.0kb downstream 2.0kb downstream 7707 true Chr5: 1879937-1887643 Arabidopsis thaliana
AT5G06220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1885644-1887643 Arabidopsis thaliana
AT5G06220 5.0kb upstream 5.0kb upstream 10707 true Chr5: 1874937-1885643 Arabidopsis thaliana
AT5G06220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1874937-1879936 Arabidopsis thaliana
AT5G06220 5.0kb downstream 5.0kb downstream 10707 true Chr5: 1879937-1890643 Arabidopsis thaliana
AT5G06220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1885644-1890643 Arabidopsis thaliana
AT5G06220 10.0kb upstream 10.0kb upstream 15707 true Chr5: 1869937-1885643 Arabidopsis thaliana
AT5G06220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1869937-1879936 Arabidopsis thaliana
AT5G06220 10.0kb downstream 10.0kb downstream 15707 true Chr5: 1879937-1895643 Arabidopsis thaliana
AT5G06220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1885644-1895643 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374069 5261 Brassicaceae View MSA
123837098 5264 Brassicales-Malvales View MSA
124338859 5266 SBM View MSA
124237079 5268 Malvidae View MSA
124063652 5270 Rosid View MSA
123740190 5271 Pentapetalae View MSA
122788808 5272 Eudicot View MSA
122047969 5273 Angiosperm View MSA
121348078 5274 Embryophyte View MSA
123380722 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.967        
cufflinks 2.82        
cufflinks 9.492       High
cufflinks 2.836        
cufflinks 8.386        
cufflinks 2.35       Low

0 Strain