Gene : AT5G06250 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31140//PTHR31140:SF2 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VAL3 Genomic Order:  557
Name:  ? AT5G06250 Secondary Identifier:  ? PAC:19667216
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06250 0.5kb upstream 0.5kb upstream 1911 true Chr5: 1892714-1894624 Arabidopsis thaliana
AT5G06250 0.5kb upstream 0.5kb upstream 500 false Chr5: 1894125-1894624 Arabidopsis thaliana
AT5G06250 0.5kb downstream 0.5kb downstream 1911 true Chr5: 1892214-1894124 Arabidopsis thaliana
AT5G06250 0.5kb downstream 0.5kb downstream 500 false Chr5: 1892214-1892713 Arabidopsis thaliana
AT5G06250 1.0kb upstream 1.0kb upstream 2411 true Chr5: 1892714-1895124 Arabidopsis thaliana
AT5G06250 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1894125-1895124 Arabidopsis thaliana
AT5G06250 1.0kb downstream 1.0kb downstream 2411 true Chr5: 1891714-1894124 Arabidopsis thaliana
AT5G06250 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1891714-1892713 Arabidopsis thaliana
AT5G06250 2.0kb upstream 2.0kb upstream 3411 true Chr5: 1892714-1896124 Arabidopsis thaliana
AT5G06250 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1894125-1896124 Arabidopsis thaliana
AT5G06250 2.0kb downstream 2.0kb downstream 3411 true Chr5: 1890714-1894124 Arabidopsis thaliana
AT5G06250 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1890714-1892713 Arabidopsis thaliana
AT5G06250 5.0kb upstream 5.0kb upstream 6411 true Chr5: 1892714-1899124 Arabidopsis thaliana
AT5G06250 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1894125-1899124 Arabidopsis thaliana
AT5G06250 5.0kb downstream 5.0kb downstream 6411 true Chr5: 1887714-1894124 Arabidopsis thaliana
AT5G06250 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1887714-1892713 Arabidopsis thaliana
AT5G06250 10.0kb upstream 10.0kb upstream 11411 true Chr5: 1892714-1904124 Arabidopsis thaliana
AT5G06250 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1894125-1904124 Arabidopsis thaliana
AT5G06250 10.0kb downstream 10.0kb downstream 11411 true Chr5: 1882714-1894124 Arabidopsis thaliana
AT5G06250 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1882714-1892713 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371146 5261 Brassicaceae View MSA
123800110 5264 Brassicales-Malvales View MSA
124349842 5266 SBM View MSA
124251468 5268 Malvidae View MSA
124063141 5270 Rosid View MSA
123743640 5271 Pentapetalae View MSA
122794380 5272 Eudicot View MSA
122049835 5273 Angiosperm View MSA
121349423 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.178     Low Low
cufflinks 0.435        
cufflinks 0.269        
cufflinks 1.005       High
cufflinks 0.273        
cufflinks 0.395        

0 Strain