Gene : DFB A. thaliana TAIR10
Primary Identifier:  ? AT5G05980 Defline:  (1 of 3) 6.3.2.17 - Tetrahydrofolate synthase / Tetrahydrofolylpolyglutamate synthase
Genomic Order:  528 Name:  ? AT5G05980
Secondary Identifier:  ? PAC:19671840
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2161 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05980 0.5kb upstream 0.5kb upstream 5503 true Chr5: 1799490-1804992 Arabidopsis thaliana
AT5G05980 0.5kb upstream 0.5kb upstream 500 false Chr5: 1804493-1804992 Arabidopsis thaliana
AT5G05980 0.5kb downstream 0.5kb downstream 5503 true Chr5: 1798990-1804492 Arabidopsis thaliana
AT5G05980 0.5kb downstream 0.5kb downstream 500 false Chr5: 1798990-1799489 Arabidopsis thaliana
AT5G05980 1.0kb upstream 1.0kb upstream 6003 true Chr5: 1799490-1805492 Arabidopsis thaliana
AT5G05980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1804493-1805492 Arabidopsis thaliana
AT5G05980 1.0kb downstream 1.0kb downstream 6003 true Chr5: 1798490-1804492 Arabidopsis thaliana
AT5G05980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1798490-1799489 Arabidopsis thaliana
AT5G05980 2.0kb upstream 2.0kb upstream 7003 true Chr5: 1799490-1806492 Arabidopsis thaliana
AT5G05980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1804493-1806492 Arabidopsis thaliana
AT5G05980 2.0kb downstream 2.0kb downstream 7003 true Chr5: 1797490-1804492 Arabidopsis thaliana
AT5G05980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1797490-1799489 Arabidopsis thaliana
AT5G05980 5.0kb upstream 5.0kb upstream 10003 true Chr5: 1799490-1809492 Arabidopsis thaliana
AT5G05980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1804493-1809492 Arabidopsis thaliana
AT5G05980 5.0kb downstream 5.0kb downstream 10003 true Chr5: 1794490-1804492 Arabidopsis thaliana
AT5G05980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1794490-1799489 Arabidopsis thaliana
AT5G05980 10.0kb upstream 10.0kb upstream 15003 true Chr5: 1799490-1814492 Arabidopsis thaliana
AT5G05980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1804493-1814492 Arabidopsis thaliana
AT5G05980 10.0kb downstream 10.0kb downstream 15003 true Chr5: 1789490-1804492 Arabidopsis thaliana
AT5G05980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1789490-1799489 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368398 5261 Brassicaceae View MSA
123799564 5264 Brassicales-Malvales View MSA
124338906 5266 SBM View MSA
124248831 5268 Malvidae View MSA
124068713 5270 Rosid View MSA
123740446 5271 Pentapetalae View MSA
122786147 5272 Eudicot View MSA
122044962 5273 Angiosperm View MSA
121349297 5274 Embryophyte View MSA
123426614 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.11       Low
cufflinks 6.305        
cufflinks 3.737        
cufflinks 6.386       High
cufflinks 3.489        
cufflinks 5.631        

0 Strain