Gene : NEDD1 A. thaliana TAIR10
Primary Identifier:  ? AT5G05970 Defline:  (1 of 1) K16547 - protein NEDD1 (NEDD1)
Genomic Order:  527 Name:  ? AT5G05970
Secondary Identifier:  ? PAC:19667939
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05970 0.5kb upstream 0.5kb upstream 4734 true Chr5: 1794794-1799527 Arabidopsis thaliana
AT5G05970 0.5kb upstream 0.5kb upstream 500 false Chr5: 1794794-1795293 Arabidopsis thaliana
AT5G05970 0.5kb downstream 0.5kb downstream 4734 true Chr5: 1795294-1800027 Arabidopsis thaliana
AT5G05970 0.5kb downstream 0.5kb downstream 500 false Chr5: 1799528-1800027 Arabidopsis thaliana
AT5G05970 1.0kb upstream 1.0kb upstream 5234 true Chr5: 1794294-1799527 Arabidopsis thaliana
AT5G05970 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1794294-1795293 Arabidopsis thaliana
AT5G05970 1.0kb downstream 1.0kb downstream 5234 true Chr5: 1795294-1800527 Arabidopsis thaliana
AT5G05970 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1799528-1800527 Arabidopsis thaliana
AT5G05970 2.0kb upstream 2.0kb upstream 6234 true Chr5: 1793294-1799527 Arabidopsis thaliana
AT5G05970 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1793294-1795293 Arabidopsis thaliana
AT5G05970 2.0kb downstream 2.0kb downstream 6234 true Chr5: 1795294-1801527 Arabidopsis thaliana
AT5G05970 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1799528-1801527 Arabidopsis thaliana
AT5G05970 5.0kb upstream 5.0kb upstream 9234 true Chr5: 1790294-1799527 Arabidopsis thaliana
AT5G05970 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1790294-1795293 Arabidopsis thaliana
AT5G05970 5.0kb downstream 5.0kb downstream 9234 true Chr5: 1795294-1804527 Arabidopsis thaliana
AT5G05970 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1799528-1804527 Arabidopsis thaliana
AT5G05970 10.0kb upstream 10.0kb upstream 14234 true Chr5: 1785294-1799527 Arabidopsis thaliana
AT5G05970 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1785294-1795293 Arabidopsis thaliana
AT5G05970 10.0kb downstream 10.0kb downstream 14234 true Chr5: 1795294-1809527 Arabidopsis thaliana
AT5G05970 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1799528-1809527 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041012 5273 Angiosperm View MSA
122379577 5261 Brassicaceae View MSA
123838152 5264 Brassicales-Malvales View MSA
124350555 5266 SBM View MSA
124249985 5268 Malvidae View MSA
124066799 5270 Rosid View MSA
123740021 5271 Pentapetalae View MSA
122787033 5272 Eudicot View MSA
121345186 5274 Embryophyte View MSA
123426376 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.501        
cufflinks 3.585        
cufflinks 1.357        
cufflinks 3.688        
cufflinks 1.318       Low
cufflinks 3.899        

0 Strain