Gene : FAD8 A. thaliana TAIR10
Primary Identifier:  ? AT5G05580 Defline:  (1 of 3) K10257 - omega-3 fatty acid desaturase (delta-15 desaturase) (FAD8, desB)
Genomic Order:  485 Name:  ? AT5G05580
Secondary Identifier:  ? PAC:19669106
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05580 0.5kb upstream 0.5kb upstream 2947 true Chr5: 1663585-1666531 Arabidopsis thaliana
AT5G05580 0.5kb upstream 0.5kb upstream 500 false Chr5: 1663585-1664084 Arabidopsis thaliana
AT5G05580 0.5kb downstream 0.5kb downstream 2947 true Chr5: 1664085-1667031 Arabidopsis thaliana
AT5G05580 0.5kb downstream 0.5kb downstream 500 false Chr5: 1666532-1667031 Arabidopsis thaliana
AT5G05580 1.0kb upstream 1.0kb upstream 3447 true Chr5: 1663085-1666531 Arabidopsis thaliana
AT5G05580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1663085-1664084 Arabidopsis thaliana
AT5G05580 1.0kb downstream 1.0kb downstream 3447 true Chr5: 1664085-1667531 Arabidopsis thaliana
AT5G05580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1666532-1667531 Arabidopsis thaliana
AT5G05580 2.0kb upstream 2.0kb upstream 4447 true Chr5: 1662085-1666531 Arabidopsis thaliana
AT5G05580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1662085-1664084 Arabidopsis thaliana
AT5G05580 2.0kb downstream 2.0kb downstream 4447 true Chr5: 1664085-1668531 Arabidopsis thaliana
AT5G05580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1666532-1668531 Arabidopsis thaliana
AT5G05580 5.0kb upstream 5.0kb upstream 7447 true Chr5: 1659085-1666531 Arabidopsis thaliana
AT5G05580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1659085-1664084 Arabidopsis thaliana
AT5G05580 5.0kb downstream 5.0kb downstream 7447 true Chr5: 1664085-1671531 Arabidopsis thaliana
AT5G05580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1666532-1671531 Arabidopsis thaliana
AT5G05580 10.0kb upstream 10.0kb upstream 12447 true Chr5: 1654085-1666531 Arabidopsis thaliana
AT5G05580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1654085-1664084 Arabidopsis thaliana
AT5G05580 10.0kb downstream 10.0kb downstream 12447 true Chr5: 1664085-1676531 Arabidopsis thaliana
AT5G05580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1666532-1676531 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372039 5261 Brassicaceae View MSA
123838789 5264 Brassicales-Malvales View MSA
124338417 5266 SBM View MSA
124240620 5268 Malvidae View MSA
124069335 5270 Rosid View MSA
123752062 5271 Pentapetalae View MSA
122788316 5272 Eudicot View MSA
122045494 5273 Angiosperm View MSA
121344489 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.781       High
cufflinks 0.479        
cufflinks 12.633        
cufflinks 0.513        
cufflinks 7.671        
cufflinks 0.559        

0 Strain