Gene : AT5G08520 A. thaliana TAIR10
Defline:  (1 of 3) PTHR24078:SF279 - DUPLICATED SANT DNA-BINDING DOMAIN-CONTAINING PROTEIN Genomic Order:  798
Name:  ? AT5G08520 Secondary Identifier:  ? PAC:19666677
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08520 0.5kb upstream 0.5kb upstream 3688 true Chr5: 2755175-2758862 Arabidopsis thaliana
AT5G08520 0.5kb upstream 0.5kb upstream 500 false Chr5: 2758363-2758862 Arabidopsis thaliana
AT5G08520 0.5kb downstream 0.5kb downstream 3688 true Chr5: 2754675-2758362 Arabidopsis thaliana
AT5G08520 0.5kb downstream 0.5kb downstream 500 false Chr5: 2754675-2755174 Arabidopsis thaliana
AT5G08520 1.0kb upstream 1.0kb upstream 4188 true Chr5: 2755175-2759362 Arabidopsis thaliana
AT5G08520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2758363-2759362 Arabidopsis thaliana
AT5G08520 1.0kb downstream 1.0kb downstream 4188 true Chr5: 2754175-2758362 Arabidopsis thaliana
AT5G08520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2754175-2755174 Arabidopsis thaliana
AT5G08520 2.0kb upstream 2.0kb upstream 5188 true Chr5: 2755175-2760362 Arabidopsis thaliana
AT5G08520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2758363-2760362 Arabidopsis thaliana
AT5G08520 2.0kb downstream 2.0kb downstream 5188 true Chr5: 2753175-2758362 Arabidopsis thaliana
AT5G08520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2753175-2755174 Arabidopsis thaliana
AT5G08520 5.0kb upstream 5.0kb upstream 8188 true Chr5: 2755175-2763362 Arabidopsis thaliana
AT5G08520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2758363-2763362 Arabidopsis thaliana
AT5G08520 5.0kb downstream 5.0kb downstream 8188 true Chr5: 2750175-2758362 Arabidopsis thaliana
AT5G08520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2750175-2755174 Arabidopsis thaliana
AT5G08520 10.0kb upstream 10.0kb upstream 13188 true Chr5: 2755175-2768362 Arabidopsis thaliana
AT5G08520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2758363-2768362 Arabidopsis thaliana
AT5G08520 10.0kb downstream 10.0kb downstream 13188 true Chr5: 2745175-2758362 Arabidopsis thaliana
AT5G08520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2745175-2755174 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370176 5261 Brassicaceae View MSA
123840056 5264 Brassicales-Malvales View MSA
124345924 5266 SBM View MSA
124245164 5268 Malvidae View MSA
124061901 5270 Rosid View MSA
123750752 5271 Pentapetalae View MSA
122788591 5272 Eudicot View MSA
122045009 5273 Angiosperm View MSA
121349410 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.154     High High
cufflinks 12.384        
cufflinks 23.297        
cufflinks 12.732        
cufflinks 25.276        
cufflinks 10.469       Low

0 Strain