Gene : AT5G08510 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  797
Name:  ? AT5G08510 Secondary Identifier:  ? PAC:19670128
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08510 0.5kb upstream 0.5kb upstream 2518 true Chr5: 2752599-2755116 Arabidopsis thaliana
AT5G08510 0.5kb upstream 0.5kb upstream 500 false Chr5: 2752599-2753098 Arabidopsis thaliana
AT5G08510 0.5kb downstream 0.5kb downstream 2518 true Chr5: 2753099-2755616 Arabidopsis thaliana
AT5G08510 0.5kb downstream 0.5kb downstream 500 false Chr5: 2755117-2755616 Arabidopsis thaliana
AT5G08510 1.0kb upstream 1.0kb upstream 3018 true Chr5: 2752099-2755116 Arabidopsis thaliana
AT5G08510 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2752099-2753098 Arabidopsis thaliana
AT5G08510 1.0kb downstream 1.0kb downstream 3018 true Chr5: 2753099-2756116 Arabidopsis thaliana
AT5G08510 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2755117-2756116 Arabidopsis thaliana
AT5G08510 2.0kb upstream 2.0kb upstream 4018 true Chr5: 2751099-2755116 Arabidopsis thaliana
AT5G08510 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2751099-2753098 Arabidopsis thaliana
AT5G08510 2.0kb downstream 2.0kb downstream 4018 true Chr5: 2753099-2757116 Arabidopsis thaliana
AT5G08510 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2755117-2757116 Arabidopsis thaliana
AT5G08510 5.0kb upstream 5.0kb upstream 7018 true Chr5: 2748099-2755116 Arabidopsis thaliana
AT5G08510 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2748099-2753098 Arabidopsis thaliana
AT5G08510 5.0kb downstream 5.0kb downstream 7018 true Chr5: 2753099-2760116 Arabidopsis thaliana
AT5G08510 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2755117-2760116 Arabidopsis thaliana
AT5G08510 10.0kb upstream 10.0kb upstream 12018 true Chr5: 2743099-2755116 Arabidopsis thaliana
AT5G08510 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2743099-2753098 Arabidopsis thaliana
AT5G08510 10.0kb downstream 10.0kb downstream 12018 true Chr5: 2753099-2765116 Arabidopsis thaliana
AT5G08510 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2755117-2765116 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364903 5261 Brassicaceae View MSA
123832133 5264 Brassicales-Malvales View MSA
124321776 5266 SBM View MSA
124243300 5268 Malvidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.322        
cufflinks 3.471        
cufflinks 3.34        
cufflinks 4.196       High
cufflinks 2.987       Low
cufflinks 3.842        

0 Strain